Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1089 ATGTCATTCCGAAGCATAGTTCGTGATGTAAGGGACAGTTTTGGGAGCTTATCTAGGCGGAGTTTTGATGTCAACAGGCTGACTGGCCACCACCGAGGAAAGTCTCACGGATCTTTTCAAGATTTACATGATCAGCCTCTAGTTATTCAAAGTAGCCGCTGGGTGAGCCTACCCCCGGAATTGCTATATGATGTTATTAGAAGGCTAGAGGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCGTGCGCTGCAGTTTGCCGGTCCTGGAGGAACATGTGCAAGGAAATTGTGAAGAGCCCAGAATTCTGTGGAAAACTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTTCTCCTATCTGCCAAGAGGACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGACGCTGACAACATCTCCAGATCAAGTAGCACTTACATTGGAAAGCTGAGATCAAATTTTCTTGGCACAAAATTCATAATATATGATGCACAGCCACCATATACTTCTGCGCAAATACCCCCTCCAGGTACTGGCAAGACAAGCCGAAGGTTTTATTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAATTAAATGTGCTGGGGACACGAGGCCCAAGGAGGATGCACTGTATTATGCATTCGATTCCAGTCTCTGCACTTGATACGGATGGCACGGTTCCTGGCCAACAAGAGCTGCTGCCTTGCACCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCCAAGTCTCTAGACCACTCTATTGAGTTCAGTAGTGCACGATTCTCTGACATTGGGGGAGCATCCTGCAGCAACGATGATGAGGATAGCAAGATGAGACCCTTGATTCTTAAAAACAAACCTCCAAGATGGCACGAACAGCTTCAATGCTGGTGTCTCAACTTCCGTGGACGTGTGACAGTTGCTTCTGTCAAAAACTTCCAGTTGATAGCGGCCACCCAGCCAGCTGCTGGCGTGCCCACACCGTTTCAGCCGGCCCCACCTGGAGATCACGATAAGATAATCCTGCAATTCGGAAAAGTTGGGAAAGATATGTTCACCATGGACTACCGATATCCTCTATCCACTTTCCAGGCTTTCGCGATATGCTTAAGCAGCTTCGACACCAAACTGGCTTGTGAATAG 1296 0.4653 MSFRSIVRDVRDSFGSLSRRSFDVNRLTGHHRGKSHGSFQDLHDQPLVIQSSRWVSLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDAQPPYTSAQIPPPGTGKTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDTDGTVPGQQELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDIGGASCSNDDEDSKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGVPTPFQPAPPGDHDKIILQFGKVGKDMFTMDYRYPLSTFQAFAICLSSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1089 431 FunFam Tubby-like F-box protein 49 102 - -
Lele36g1089 431 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Lele36g1089 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Lele36g1089 431 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Lele36g1089 431 Pfam Tub family 115 426 IPR000007 -
Lele36g1089 431 Gene3D - 49 102 - -
Lele36g1089 431 SUPERFAMILY Tubby C-terminal domain-like 103 431 IPR025659 -
Lele36g1089 431 FunFam Tubby-like F-box protein 111 431 - -
Lele36g1089 431 Pfam F-box domain 54 101 IPR001810 GO:0005515
Lele36g1089 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Lele36g1089 431 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Lele36g1089 431 Gene3D Tubby Protein; Chain A 113 425 IPR025659 -
Lele36g1089 431 PANTHER TUBBY-RELATED 29 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1089 Lele-ChrLele36 13626559 13629133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1089 1 431 TUB Transcription Factor Family AT1G76900 68.467 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele36g1089 Tub 5.7e-116 CL0395