Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1078 ATGATTTTGGTTCTCCGGCATTTGAGTGGTTCCGATTTGAATTGTACTTGCTTCGTTATCGGCTTGAGTGTGACTATTTGCTTAGAAAAATTTTGTTACAAGTGTGAGGCTCTAATCGGTTTTGTTTTGAATGAGTTTAAAATGGCTGAAGTGGAAGAGTATCGCTGCTTCATCGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAAGATTCATTTGAGAAGTTTGGAAATCTTCTTGAAGCCCGGGTGGCTGTGGACAAGTTCTCAGGTCGCTCTCGTGGTTTTGGATTTGTAACGTTTGATGATCATAAAGCTATGGAAGATGCCATTAAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAAGCAAAACCTCAACAAGGATCAGCTAGAGATGATGTTGATCGGTACCGAGAAAATGGTCGTGATCGCAATCATAGACGAGATTATGGAGGTGGTCGAAGTTCTAATAGTGGTGAGTGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCTGAAGAAGAGGGAAGAGGTGGAAGGTATGGTGATAGAGAAAGTAGATATGGTAGCAGCGGTGGTGGAGGTCGCTATGGCCCTGAGAGAAATGCTGATCGTTATTCTGGTGGGCGAAACAGGGATGTTGATAGACATGGGGATTATGGAAATGATCGATATAATCGTAGTGATCGTGCTGGACCTTATGAGAGGCGAGGAACAGGAGGCTCTCGTTCTGGATAA 768 0.431 MILVLRHLSGSDLNCTCFVIGLSVTICLEKFCYKCEALIGFVLNEFKMAEVEEYRCFIGGLSWSTSDRKLKDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDHKAMEDAIKAMNGMDLDGRTITVDKAKPQQGSARDDVDRYRENGRDRNHRRDYGGGRSSNSGECFKCGKPGHFARECPEEEGRGGRYGDRESRYGSSGGGGRYGPERNADRYSGGRNRDVDRHGDYGNDRYNRSDRAGPYERRGTGGSRSG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1078 255 SMART rrm1_1 55 128 IPR000504 GO:0003723
Lele36g1078 255 MobiDBLite consensus disorder prediction 173 194 - -
Lele36g1078 255 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Lele36g1078 255 MobiDBLite consensus disorder prediction 133 160 - -
Lele36g1078 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Lele36g1078 255 Gene3D - 164 220 - -
Lele36g1078 255 SUPERFAMILY RNA-binding domain, RBD 49 160 IPR035979 GO:0003676
Lele36g1078 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Lele36g1078 255 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 48 250 - -
Lele36g1078 255 MobiDBLite consensus disorder prediction 123 255 - -
Lele36g1078 255 SUPERFAMILY Retrovirus zinc finger-like domains 149 188 IPR036875 GO:0003676|GO:0008270
Lele36g1078 255 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Lele36g1078 255 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Lele36g1078 255 Gene3D - 44 163 IPR012677 -
Lele36g1078 255 MobiDBLite consensus disorder prediction 213 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1078 Lele-ChrLele36 13532779 13534269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1078 56 150 Eukaryotic Initiation Factors Gene Family AT4G34110 29.474 8.78e-07 47.8