Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1022 ATGGGGCTCCGCCACCGGAAGGTTCTCGAAGAAATCTGCTACCTTTACTGCAACATGAAAGATTCTTCCCCTTGTTTATCCTCTGATTGCAAAGGTTGCCGCATCCAGTGCTCCGTCGAGCCGCCAATTGACTACACCCCGCCATCTCCTTTGGCCTTCGATGACTATGGCTATTTCGATGATCCCCACAAAAGCCACCATAATATCTCCACCTGGTTGACCGTCGTTATCGCTGTTCTCGCCGCCGCTTTCCTCGTACTCCTCTGCTTCGCCATCTACCGGAGATTCCTCTCCGGCCGTTTCAGGAGAAGGAGCTCGGAGACGGAGGAAGATCCACGGGGAGATTTTCTCGATGAGGAAGAGGGTCCTGTGTTGGACCATCCCATATGGTACATTCGAACCCCTGGTCTTCAACAATCGATCATTTCTGCGATTACTGTGTGTAAATATAAGAAAGGGGAAGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAGACGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTCCCTTGTATTGATACCTGGCTTCGATCTCACACCAACTGTCCTCTGTGCCGAGCTCCGATCGTCACCAACCCCGCCACGGTTATCGCCTCGCCGGAACCGGGGCCAAATGTTGTTGCTTCGACTGATTCAGAAGAACCCCAGATGGAAATAGTTGAAAATGGAAGAGAAAATAGTGGTGGAGTTGTGATGGAGAACAGTGATGGTGAATTGAGAAATAGAGATGAGGAAGAAGAATCAGAAGAAGGAGAAGGAGGAAGAAGAAGAGTAATGGTAGAGGAAAAAGAATTAGGGAATTTGCAGCCGAGAAGAAGATCTGTGTCTCTGGATTCTTCAGCTGTAGAGAAGATCAATTGTGCTCTTGCTAGAACTAATAATTCATCATCTTCATCATCTTCTTCTTCCTCAAAGAAGGTTTCCAAAAGCGGTTCTTCTTCTTTCAGAATAAAGTCTCTTCAGATTGTTGCAGGCACTGCAATGAAGAGATCTCGTTCACATTCATGGTACAGTCAAAGTCAGAGGAAGCCAAATGTTCCTATTAGAAGCTTCTGA 1110 0.4658 MGLRHRKVLEEICYLYCNMKDSSPCLSSDCKGCRIQCSVEPPIDYTPPSPLAFDDYGYFDDPHKSHHNISTWLTVVIAVLAAAFLVLLCFAIYRRFLSGRFRRRSSETEEDPRGDFLDEEEGPVLDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPIVTNPATVIASPEPGPNVVASTDSEEPQMEIVENGRENSGGVVMENSDGELRNRDEEEESEEGEGGRRRVMVEEKELGNLQPRRRSVSLDSSAVEKINCALARTNNSSSSSSSSSSKKVSKSGSSSFRIKSLQIVAGTAMKRSRSHSWYSQSQRKPNVPIRSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1022 369 CDD RING-H2_PA-TM-RING 161 204 - -
Lele36g1022 369 SMART ring_2 162 203 IPR001841 -
Lele36g1022 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 64 230 IPR044675 -
Lele36g1022 369 Pfam Ring finger domain 161 204 IPR001841 -
Lele36g1022 369 FunFam RING-H2 finger protein ATL54 137 210 - -
Lele36g1022 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Lele36g1022 369 SUPERFAMILY RING/U-box 156 210 - -
Lele36g1022 369 MobiDBLite consensus disorder prediction 238 275 - -
Lele36g1022 369 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lele36g1022 369 MobiDBLite consensus disorder prediction 310 333 - -
Lele36g1022 369 MobiDBLite consensus disorder prediction 346 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1022 Lele-ChrLele36 13013166 13014275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1022 69 211 C3H Transcription Factor Family AT1G72220 53.691 4.48e-47 163