Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1008 ATGGTCAGACGTATGCTTTCCAAAAGTACCTTCATTTTCTCATCCATGTATTCTAAATCATTGTCAGTTCGTCCTCTTCTCTTTCAAATTTGTCACTTCCCTAGCTCTCTAAATAACTCCTCACTGCTTAGACGCCATTATCATGGATCCCGAACTATACCAGTGTCAGTATGGTGGGATTTTGAGAATTGTGATCCACCATCTGATGTGAATGCTTTTAGAATTACTCACTTCATAATGGAGGCAGTTAGAGCCAAAGGGATCATGGGGCCTCTTCAAATTAGGGCATTTGGTGACGTTTATCATCTCACAAGGGCCAACCAGGACGCTCTCACATCCACTGGGATCAAAATCATCCACGTTCCTAGAGGTGGAAAGAATACGGCCGATAGATCTCTTCTTATTGATCTTATGTATTGGGTTTCCCAAAATCCTCCTCCGGCGCATTTGTTTCTAATTTCTGGTGATAGGGATTTTGCTGAACTATTACATCGTTTGAGAATGAATAACTACAATATCCTAATTGCTGGTATAGAGATTCCTAATATTCTCTGCAGTGTAGCCACTATAGTGTGGCATTGGAATTCATTACTTAGAGGAGAAAATCTTGAAGGAAAACATTTCAATCATCCTCCTGATGGTTTGTATGGTACTTGGTATGGTCACCATGAGGCGCCTCTTGAAGACCCTTTCTCTGATGGAAAGCAATCTACACGTTCACATATTGGGGAATCCCCAAAACCTATCTCAGGTTTGAACTTACGTCCAATTCCTAAGGCAGTTGTGAGGCAGATTCGTCAAATATTGAATTCACATCCAAAAGGCATCTCTTTATCATGTCTTCGAACTGAGTTGGAACATGCTGGTATTACCTTGGATAAAGATTACTATGGGTATAACAAGTTTTCCCATTTTCTTTTATCTGTGGTACGTGTACAGCTTGGGGGTGCACGTGATAAAGAACCTATTGCACATTACATCCCCAAAAAATCTCCTGTTCCCATTAAAAGCAGTTTTGCACCATCAATGGAATTAGTTGATAATGAGGGGTTGAATCATGTGGCTACTTCAATGGCCTCATCTCATGAACTTAGTGGGGAAGATATTCCAGAGGTCCAACAGGTTGCAGACGTGGCTGAGACCAAGAGTCAATTGCCTCCTAAGGAGAATGAAATTCTTTGCTCTAGTGATACAATTCAAGCTTTTGCAGAAAGTGCAGCTTGTGACATTGGTGGAAGCACTGAATCTGTGATTGCCAAAAGCAGTGGTGGAAGCGGGGAAACTCACAGCAGTACTGCTAGCAAACGTCTAATTTTTTATGGTTGGATTAAAAGGTGGTGGCCATTCAGGAAAAAAGTTGGAAACACGCATAATTCGACTGCTCAGGGGAATGAGATGGTTTGTAATGCTGAAGAGCCTGAGTTATCAAATCTGAAACAGAGGGTCAGTTATTCTGAAGAGCTGCAGACATTAGAACAGAGACAAGTAGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACCAAGACAGACAATGAATCATTCTGGAGAGCCTAAGTTATTTTCTTGTAGTTCCTTCTGGGAGGAAATGGAATCTTTTGTTTTCACCTCCAAAGGAGAAATTCTTGTCTTCCACTCAAGAAGCAGGAAGGATATTGCGCTCAGTTTTCAAAAGTATGGACCTCAGGTTCTCCACTCTCTTAGTGAAAATGATCTCCTTCTATTGGTAGATTTGTTAATATCTGAGAAAAAATGTCTGGAGGAAAGGCCTTCTCAGACTAATCCTTTCCGTGTCATTCCAAGCATAACAACACGAAGTAACTCACAAAAATCATCGGAATGGGAAGTTGATGAAAAACAGAGTATTCCTCATACCATGGCTTCTTCACCTGCCAGTCAAAAAGAGCATACTGAAAAATCTGCAACTGACGTGTTAGCAGATGTTCAGAAACTTGTAAGTGAGTTGTTGACGGAACACCCGGATGGGTGCAATATGGGTCAGATACCAATTCTCTTTCTTCAGAAGTATGGCTACTTTTTAGATGTTGGGAAGCTTGGTCATGATAGGTTATCGTCCCTCGTACAGAGTCTTCCTGGAGTAAAAACAGCTCGTTCTAATTTCTTTCCCGTAAATTGTGGCATACGTGTTTCTGGTAATGAAACTTCAATTCTCAAAACTCAAGGGACAAAATTAAGTGATGTAGAGTACCAATATTCAGATAATGAGTTGCATGATTCATACTCTGAAGATGATTGGAAGGACTCCCCGTGGGAGGAATTAGGACCTGTTTCTGTCAGCAATTCCAACGAGAGCGACCTGGAATCAGAGCCAAAGCAGGAAGCAATAGTGCTAAAGACCGCAATAGATCCTGATTATGAACCCGATCTCTCTGGTGATGATTCTTCCAAATCTGGAGGAGATAACTCCTGTTTAACTCAAGCAGAAGAGGAAGGTGAGCCAAAACTTAAGGAGAGTGACCTGGAATCAGAGCCAAGGCAGGAAGAAATAGAGCTAAAGACCGCTATAGATCCTGATTACGAACCTTATCTCTCTGATGATGATTCTTCCGAATCTGGAGGAGTTAAGCTATGTTTAACTCAAACAGAAGAGGAAGGTCAGCCAAAACTTAACGAGAGCGATGGCAATGAGAGTGACCTGGAATCAAAACCAAGGGGCAATGAGAGCGACCTGGAATCAAAACCAAGGCAGGTAGCTGTAGAGCTAAAGACCGCAATAGATCCTGATTATGAACCTGATCTCTTTGATGATGATTCTTCTGAATCTGGAGGAGTTAACCTATGTTTAACTCAAACAGAAGAGGAAGGTCAGCCAAAACTTAATGAGAGCGACCTGGAATCAAAACCAAGGCAGGAAGCTGTAGAGCTAAAGACTGCAATAGTTCCTGATTATGAACATGATCTCTCTGATGATTATTTTTCTGAATCTGGAGGAGATAACTCCTGTTTAACTCAATCAGAAGACGAAGGCCGGCCAAAACTTAATGGGGAAGACAGTTCTTTGCAAACTCTGGACCCAGTGTATGGCAGTCAAGGAGAGGATAGTGGGAATCCGAATGAGGTCAATGCAGAAGATGATGGTCTAGCTGATGGTTTAAATCCACCAAGGATTTCCACTCCGGCTACCAGTTCAGAAATTCTTTCAGGGGACCATGAAGAGCAGCACAAGCCTCTGAAAATCTGTTCACTTGATGCTGAACCAGTCTCACACAAGAACAAGGAGATGATCAAAGGGATATTACAATGCTTGAAAAGGTCCGAGGACATGAATATGCCAAATTGA 3300 0.4185 MVRRMLSKSTFIFSSMYSKSLSVRPLLFQICHFPSSLNNSSLLRRHYHGSRTIPVSVWWDFENCDPPSDVNAFRITHFIMEAVRAKGIMGPLQIRAFGDVYHLTRANQDALTSTGIKIIHVPRGGKNTADRSLLIDLMYWVSQNPPPAHLFLISGDRDFAELLHRLRMNNYNILIAGIEIPNILCSVATIVWHWNSLLRGENLEGKHFNHPPDGLYGTWYGHHEAPLEDPFSDGKQSTRSHIGESPKPISGLNLRPIPKAVVRQIRQILNSHPKGISLSCLRTELEHAGITLDKDYYGYNKFSHFLLSVVRVQLGGARDKEPIAHYIPKKSPVPIKSSFAPSMELVDNEGLNHVATSMASSHELSGEDIPEVQQVADVAETKSQLPPKENEILCSSDTIQAFAESAACDIGGSTESVIAKSSGGSGETHSSTASKRLIFYGWIKRWWPFRKKVGNTHNSTAQGNEMVCNAEEPELSNLKQRVSYSEELQTLEQRQVASQFKEPELSEPRQTMNHSGEPKLFSCSSFWEEMESFVFTSKGEILVFHSRSRKDIALSFQKYGPQVLHSLSENDLLLLVDLLISEKKCLEERPSQTNPFRVIPSITTRSNSQKSSEWEVDEKQSIPHTMASSPASQKEHTEKSATDVLADVQKLVSELLTEHPDGCNMGQIPILFLQKYGYFLDVGKLGHDRLSSLVQSLPGVKTARSNFFPVNCGIRVSGNETSILKTQGTKLSDVEYQYSDNELHDSYSEDDWKDSPWEELGPVSVSNSNESDLESEPKQEAIVLKTAIDPDYEPDLSGDDSSKSGGDNSCLTQAEEEGEPKLKESDLESEPRQEEIELKTAIDPDYEPYLSDDDSSESGGVKLCLTQTEEEGQPKLNESDGNESDLESKPRGNESDLESKPRQVAVELKTAIDPDYEPDLFDDDSSESGGVNLCLTQTEEEGQPKLNESDLESKPRQEAVELKTAIVPDYEHDLSDDYFSESGGDNSCLTQSEDEGRPKLNGEDSSLQTLDPVYGSQGEDSGNPNEVNAEDDGLADGLNPPRISTPATSSEILSGDHEEQHKPLKICSLDAEPVSHKNKEMIKGILQCLKRSEDMNMPN 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1008 1099 ProSiteProfiles OST-type HTH domain profile. 257 330 IPR025605 -
Lele36g1008 1099 PANTHER LIMKAIN B LKAP 42 654 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele36g1008 1099 MobiDBLite consensus disorder prediction 1002 1024 - -
Lele36g1008 1099 Gene3D - 258 325 IPR041966 -
Lele36g1008 1099 Gene3D - 645 707 IPR041966 -
Lele36g1008 1099 CDD LOTUS 258 318 - -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 980 994 - -
Lele36g1008 1099 Pfam OST-HTH/LOTUS domain 645 701 IPR025605 -
Lele36g1008 1099 Pfam OST-HTH/LOTUS domain 259 309 IPR025605 -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 745 1061 - -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 873 903 - -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 943 979 - -
Lele36g1008 1099 CDD LOTUS 645 706 - -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 609 640 - -
Lele36g1008 1099 CDD PIN_limkain_b1_N_like 54 176 - -
Lele36g1008 1099 Pfam NYN domain 55 188 IPR021139 GO:0004540
Lele36g1008 1099 Gene3D - 52 195 - -
Lele36g1008 1099 MobiDBLite consensus disorder prediction 814 842 - -
Lele36g1008 1099 ProSiteProfiles OST-type HTH domain profile. 644 718 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1008 Lele-ChrLele36 12890581 12894569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1008 55 200 C2H2 Transcription Factor Family AT5G61190 41.497 7.26e-32 132