Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0999 ATGACGAGAAAGAAGATAGACATAAAGAAGATCGAGAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGCTCTCATTGTCTTTTCTTCCACTGGAAAGCTCCATGACTATGCAAGCTCAAGGCTTCATTTCATGTTCATGCTCTTTGATATTTCCTTGTTATACTTCTTGTGGGCATTCTCTTTGGAAATCGAGGAGTTAAGCACTAGTACTGAAACTTCTTCTAAGTTCACAAGCTTCACTTCTTCTAAGTTCACAGTTGAAGAAACCATTTTATGA 339 0.3894 MTRKKIDIKKIENITARQVTFSKRRRGLFKKAKELATLCDAEIALIVFSSTGKLHDYASSRLHFMFMLFDISLLYFLWAFSLEIEELSTSTETSSKFTSFTSSKFTVEETIL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0999 112 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Lele36g0999 112 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 69 - -
Lele36g0999 112 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
Lele36g0999 112 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Lele36g0999 112 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele36g0999 112 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0999 Lele-ChrLele36 12766699 12768771 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0999 1 66 MADS-box Gene Family AT4G24540 68.182 1.47e-27 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele36g0999 SRF-TF 9.9e-26 No_clan