Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0995 ATGACGAGAAGGAAGATAGCTATAAAGAAGATCGAGAACGTAGCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGAAAAGGTCTATTCAAGAAGGCCATGGAGCTCTCAACTCTCTGTGATGCTGAGATTGCACTCTTAGTTTTCTCAGCTACTGGTAAACTCTTTGATTATGCTAGTACAAGCCCGAGGCAAGTAATTGAAAGGAGAAACATCTACTCAGATGTGAACCTTGTCAAGTCATACCAGCCATCTCAAGAACTGCAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACACGTGAACTGAGACAGCTTAATGGAGAAGAACTACAAGGGTTGTCAGTAAAAGATCTACGGAAACTTGAAGATTTACTTAACACAAGCTTGAATCGCATTTCAAAAGCAAAGCTCTACCCATTGGAAGATCTTGATGATGCTGAAGAACTTAATGTTGTTGATCTTGTGATACTTCTTTCACTAGGTGAGGAAAATGAGAAAGAAACTGGACTTGCCAATGGTGGTGGTGTTGCTTGTCTATTGGATTCTTTTCATCATGAATAG 576 0.3993 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSATGKLFDYASTSPRQVIERRNIYSDVNLVKSYQPSQELQVEGEYFKLNKELKEKTRELRQLNGEELQGLSVKDLRKLEDLLNTSLNRISKAKLYPLEDLDDAEELNVVDLVILLSLGEENEKETGLANGGGVACLLDSFHHE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0995 191 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele36g0995 191 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lele36g0995 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 145 - -
Lele36g0995 191 Pfam K-box region 85 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele36g0995 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele36g0995 191 Coils Coil 93 113 - -
Lele36g0995 191 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Lele36g0995 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele36g0995 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele36g0995 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele36g0995 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele36g0995 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0995 Lele-ChrLele36 12657019 12662894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0995 1 141 MADS-box Gene Family AT2G22540 53.147 3.50e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele36g0995 K-box 3.4e-10 No_clan