Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0943 ATGGGAAGAGTGAAGATACCGATTAAGAGGATTGACAATTCAACCAACAGGCAAATCACTTTCTCAAAGAGACGAAGTGGTTTGCTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGCGACGCACAAGTAGGAGTTATCGTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCGTGAAATCAATTATTGAGAGCTACAATAAACAAAAAGAGGAACATCATCCGCTTATGGATCCAGCTTCTGAAGCCAAGTTTTGGCAAAGAGAAGCAACAGTCTTGAGGCAACAACTTCAACACTTTCAGGAATTGAACAGGCAATTGATGGGTGAACAACTTTCTGTTTTGGGCATTAACGAAGTGAAAAATTTGGAAAATCAACTGGAGATAAGTTTGAAACGTGTCAAGATCAAAACGGATCAAATCTTAAGTGATGAGATTAAAGAGCTACAACAAAAGGGAAATCAAATTAGTCATGAAAATGTTGAACTCTATAAAAGGATACAAGTCGTTAGAACAGAAAATGCAGAGTTAAAAAAGGTAATGAAGTTGATTAAAAAAAAGTTATCCAATTAG 582 0.3797 MGRVKIPIKRIDNSTNRQITFSKRRSGLLKKARELAILCDAQVGVIVFSSTGKLYEYGSSSVKSIIESYNKQKEEHHPLMDPASEAKFWQREATVLRQQLQHFQELNRQLMGEQLSVLGINEVKNLENQLEISLKRVKIKTDQILSDEIKELQQKGNQISHENVELYKRIQVVRTENAELKKVMKLIKKKLSN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0943 193 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele36g0943 193 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele36g0943 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 Coils Coil 120 143 - -
Lele36g0943 193 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele36g0943 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele36g0943 193 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele36g0943 193 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele36g0943 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0943 Lele-ChrLele36 11550664 11553802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0943 1 182 MADS-box Gene Family AT2G22630 57.692 2.80e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele36g0943 K-box 1.2e-20 No_clan