Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0862 ATGGCTGCTCCTAGTTCTACGCACCTCCCGGACCACTTCAAGTGTCCGATTTCGCTCGAGATAATGTCCGACCCGGTTATCCTCTCTTCCGGTCACACCTTCGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGCCACCGGGCTTGTCCAATTACGAACCTGCCCCTTCCTGATTGTCCTTCCCTCGTACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTACCATATCTCACCATTCAAGCAGCAGCCTCCTTCCCAACCGGAAACCCTAATTTCCGCTATTACCTCTCACTCGTCGTCATTGGAGAGCAAAATTGAATCGCTTGACAAACTTACGCGCCTTTCCAAGCGTGACTCGGTTTTCCGTCGGCGGTTGACTGAGTCAGGAGTAATGCCGGTGGTGCTGAACTGCGTTGTCTCTGGTGAGCCTAGGTTACAGGAGAAAGCGCTTGCGTTGTTGCTCAATCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAGGTTGTGGCTGTTCTGTTAGGTGGCTCACCGGATTGCCGAGCGGTGGCGGCAACCATGTTGACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAATTGGTGCTTATCCATATGCTATAGGAGCTCTTGCTTCTCTTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCAGCCACAGCGCTCTATGCCATATGTTCTTTTCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGCGGTACCAATTTTGCTAAGAAATGTTGATTCTGGGCTTGAAAGGGCCGTTGAAGTTCTTGGTGTCCTTGCTAAGTGTAGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGGTGCATACAGATTTTAGTACGGGTGTTGAGGAATGGAAGCACGAGGGGAATTCAATATGCCTTGTTAGCACTGAATTCCGTTTGCTGTTATAGTGAAAAAATGGTTCTTGATGCGACTAAACAAGGAGTTTTGGATATTTGTCTGGGATTGCTGGAAGATGATAATGAAAAAATAAGGAGAAATTCATCCAGTTTGATTAAGGTTTTACGTGGTAACCACCGGATTAGTTTATAG 1116 0.4857 MAAPSSTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRACPITNLPLPDCPSLVPNHALRSLISNYYHISPFKQQPPSQPETLISAITSHSSSLESKIESLDKLTRLSKRDSVFRRRLTESGVMPVVLNCVVSGEPRLQEKALALLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIGALASLLRDGEGREKKEAATALYAICSFPDNRRRAVECGAVPILLRNVDSGLERAVEVLGVLAKCREGREQMERYNGCIQILVRVLRNGSTRGIQYALLALNSVCCYSEKMVLDATKQGVLDICLGLLEDDNEKIRRNSSSLIKVLRGNHRISL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0862 371 CDD RING-Ubox_PUB 13 54 IPR045210 -
Lele36g0862 371 SMART arm_5 282 323 IPR000225 GO:0005515
Lele36g0862 371 SMART arm_5 121 161 IPR000225 GO:0005515
Lele36g0862 371 SMART arm_5 325 365 IPR000225 GO:0005515
Lele36g0862 371 SMART arm_5 162 202 IPR000225 GO:0005515
Lele36g0862 371 SMART arm_5 245 281 IPR000225 GO:0005515
Lele36g0862 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 85 IPR013083 -
Lele36g0862 371 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Lele36g0862 371 SUPERFAMILY RING/U-box 7 77 - -
Lele36g0862 371 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Lele36g0862 371 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Lele36g0862 371 SUPERFAMILY ARM repeat 92 363 IPR016024 -
Lele36g0862 371 Gene3D - 89 268 IPR011989 -
Lele36g0862 371 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Lele36g0862 371 Gene3D - 269 363 IPR011989 -
Lele36g0862 371 PANTHER U BOX DOMAIN-CONTAINING 9 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0862 Lele-ChrLele36 9923881 9924996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0862 9 365 U-box Gene Family AT4G21350 61.644 2.24e-154 437