Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0802 ATGGCCTATGGGCACTGCCTATCCCAGGAATGGAAACCCAGCAGCCCTAGAGAGGATGAAAACTCAACTAATGGTTGTTTCGATTGCAACATCTGCTTAGACTTTGCATGCGAACCGGTAGTCACTCACTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTTCATCTCCAAACTGATTCCTTAACATCTGATGAGCAACCTCAATGCCCAGTTTGCAAGGCTTGTATATCCTCTGCTACGATCATTCCTCTCTATGGTCGAGGGCAGGCCTCATTGGCTCAAAGCGAGCACCACAATGAGAAGGCATCGGATCTGGACATTTCTATACCACCAAGACCACCTGCTGCCAGTGTTGAAGCTCCATTGCCGTCATCATCACCATCTTCTCCTCATAACCCTTATCAGAATCAACATTTTGTTACTCCTTCTCTAGACCATGAGAATGCTTCACCACAGATGGTTAATCTTGGTGCTGCTGCCTTGATGCCAGGTTTTCGTCATCCTTTGCATGGGATGTTTGGGGAGATGGTGTATGCTAGAGTGTTTGGCAACCCAGAAAATGTATACGAATATCAGAATTCTTATCATGTGATGGGAGCTAACAGCCCCAGATTGAGGAGGCAGGAGATTCAGGCAGACAAATCATTGAAGAGAGTATCAATTTTCCTGTGTTGCTGCCTTGTTTTGTGTCTTCTAGTGTTTTGA 714 0.465 MAYGHCLSQEWKPSSPREDENSTNGCFDCNICLDFACEPVVTHCGHLYCWPCIYKWLHLQTDSLTSDEQPQCPVCKACISSATIIPLYGRGQASLAQSEHHNEKASDLDISIPPRPPAASVEAPLPSSSPSSPHNPYQNQHFVTPSLDHENASPQMVNLGAAALMPGFRHPLHGMFGEMVYARVFGNPENVYEYQNSYHVMGANSPRLRRQEIQADKSLKRVSIFLCCCLVLCLLVF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0802 237 CDD RING-HC_AtRMA_like 27 77 - -
Lele36g0802 237 MobiDBLite consensus disorder prediction 96 145 - -
Lele36g0802 237 Pfam Zinc finger, C3HC4 type (RING finger) 29 75 IPR018957 GO:0046872
Lele36g0802 237 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Lele36g0802 237 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Lele36g0802 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 122 IPR013083 -
Lele36g0802 237 SMART ring_2 29 75 IPR001841 -
Lele36g0802 237 MobiDBLite consensus disorder prediction 1 22 - -
Lele36g0802 237 SUPERFAMILY RING/U-box 24 88 - -
Lele36g0802 237 MobiDBLite consensus disorder prediction 124 145 - -
Lele36g0802 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0802 Lele-ChrLele36 6871519 6872232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0802 14 223 C3H Transcription Factor Family AT4G27470 39.815 7.16e-48 156