Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0635 ATGGATGAAGCTCAGGTTGGCTCTGGTTCCTTGCCTCCTTTCTTGGCCAAGACATATGAGATGGTGGAGGATCCTTCCTCGGATTCGGTAGTTTCTTGGAGCAGCTCTAATAAAAGTTTTGTAGTATGGGATCCGACAGAATTTTCAAGGGATTTGTTACCAAGATTCTTTAAACATAGTAACTTCTCGAGTTTCGTCAGGCAGCTGAACACTTATGGTTTTAGAAAAATTGACCCAGAACGGTGGGAATTTGCGAATGATGATTTCATAAGGGGTCAACCACATCTTTTGAAGAAATCCCCGGATAGAAAACGAAGGTTGCCGAGAGGCGGGTCCTTTTGTGATGAAGCTAGCATTGAAGATCCTATGGAGACTTCCCAAATGTCACCTAGAGAAATCTCTATCCTGACATCAACCATGGAGCGATTGACTCAGCTGGAATCATCTCTGTTATTCTGGGAGAACATTGCACATGATGTTGGTGATACGTTTCTTCAAAGTTCTTCAAACCTGGACTTTGATGAGTCTACAAGTTTTCCTGATAGTCCACCGATATCCTGTGTGCAACTAGATATTGCAATTCAGCCACCAAAGTCATCTGGAATCGACATGAATGCTGAGCCTACTGCATCTGCTGTTCCTGAGACTGTTACATCAAAGGAACAAATGTCTGGAGATAATCTGGTCTTGTCTTTTTCCATACTTCTTTTGGACCTGTTTCAGGATTTTGATTGTATTATAACAATTGGTTTCAAATTGGGCATTGCGGCAGAATCTGGTTGGGCTTGTGGATAA 795 0.4226 MDEAQVGSGSLPPFLAKTYEMVEDPSSDSVVSWSSSNKSFVVWDPTEFSRDLLPRFFKHSNFSSFVRQLNTYGFRKIDPERWEFANDDFIRGQPHLLKKSPDRKRRLPRGGSFCDEASIEDPMETSQMSPREISILTSTMERLTQLESSLLFWENIAHDVGDTFLQSSSNLDFDESTSFPDSPPISCVQLDIAIQPPKSSGIDMNAEPTASAVPETVTSKEQMSGDNLVLSFSILLLDLFQDFDCIITIGFKLGIAAESGWACG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0635 264 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 Pfam HSF-type DNA-binding 14 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 150 IPR027725 -
Lele36g0635 264 SMART hsfneu3 10 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 Gene3D - 8 105 IPR036388 -
Lele36g0635 264 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele36g0635 264 SUPERFAMILY "Winged helix" DNA-binding domain 10 99 IPR036390 -
Lele36g0635 264 FunFam Heat shock transcription factor 1 7 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0635 Lele-ChrLele36 4322210 4326346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0635 12 104 HSF AT4G17750 75.269 1.35e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele36g0635 HSF_DNA-bind 4.9e-31 CL0123