Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0588 ATGAAGGCCAGCGCTAGAATTTCTGATAAAGACAACGCAATTGCTCAGTACAGAGCTGACGCAGGGATTTTGGCTGAGTATGAGCAATCTGGTGTGTCTGGCAAGTCCTTCGATTACTCAAAGTCGGTTCTTGATGCTCCGAAATCCGTGTCGGACGAGAAAATGACGGCTTACTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGTTGTATGCTTGCGATTGAAGAACCCACTTTTCGTATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGGTTTAAACGGAAAATCTCGTTCAAAACGATTTGTGAATCTGATTGGAGTTGATGCTACTTCTCTATTCACGCCTTCTTCTGGGGCTTCCCTTGCAAAAGCTGCGGCGTCGAGGGAAATTTCGCTTCTGAATCCCATTTGGGTCTGCTCCAGAACAACCCAGAAGCCTTTTTATGCTATAATGCATCGAATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCCGGAGCCGTGCAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCTGGAGGAGATATTGGAGCTTTGTGTGATAGTGTTGTTGAAGAAGTTCAAAAGCTTACTGGATATGACAGGGTTATGGTATATAAGTTCCATAAGGATGATCATGGGGAGGTTGTGTCTGAAATCAGAAGATCAGATTTAGAACCATTTCTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTGTTCAAGCAGAACCGAGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAAAGTGAAGAGTTAAGGCAACCTCTCTGCTTGGTCAATTCTACCCTTAGGGCAACACATCAATGTCATGCACAGTACATGGAAAACATGGGCTCAATTGCTTCTCTGGTTATGGCTGTTATTGTCAATGGAAACGATACCACAAAGCTATGGGGTTTGCTCGTTTGTCACCACACTTCACCGCGTCATGTCCCTTTCCCGCTTCGCTATGCTTGTGAGTTCTTAATGCAGGCTTTTGGACTTCAGCTTTACATGGAGATGCAATTGGCAGCACAGATGGCAGATAAGAGAACTCTTAAAACCCAAACCTTACTATGTGACATGTTCCTCCGTGATGCGCCTTTTAGTATTGTTACCCAATCTCCAAGCATAATGGATCTTGTGAAGTGTGATGGTGCTGCTCTGCTTTTTGGTGGGAACTGTTGGCTGTTAGGCACAACCCCAACTGAATCACAGGTAAAAGACATTGCAGAATGGCTGCTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACGGATAGTTTGGCTGATGCCGGTTTCCCGGATGCTGCTTCAATGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGAATCAATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCATGCTGCTAAGGAAATCAAATGGGGAGGAGCCAAGCACCACCCAGAGGATAAAGATGATGGAAGAAAGATGAACCCTAGACTTTCATTTAAAGCATTTCTTGAAGTGGTAAAAAGTAAAAGTGTGCCATGGGAAGCGTCAGAAATCAATGCCATTCACTCATTACAGCTAATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAACTCATGTGAAGCAAGAGGACACTGATATGGGTGGGAATGGGATAGAAGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTGATTGAAACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGATGGTATAATCAATGGGTGGAATGCCAAAATTGCTGAACTGACCGGTCTGCAAATAAGCGAAGCTATGGGACAATCCCTTGTAAATGAAGTTATCGTTGAGGACTCACGAGAAACTGTTGACAATATTCTAAAAAGAGCCCTGGGAGGTCAGGAGCACAAAAATGTCGAGTTGAAGTTGAAACACTTTGGTCCGCCTCAGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGTTTTGTGGGTCAAGACATCACTCATGAGAAATCTGTTCTGGATAAATTTATCAAGTTGGAAGGTGATTACAAAGCTATAATACAGAGTCCCAACCCACTAATTCCACCCATATTTGCTTCAGATGAGAATGCTTGTTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAAGTTATTGGGAAAATGCTTCCTGGGGAGATCTTTGGCGGTTTATGTCGGTTAAAAGGTCAAGATACACTTACTAGTTTCACAATTATTTTGTATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTCACAATTAGATTTTTTACTAGAAAGGAGGAACTTGTGGAGGTGTTCTTGACAGTGAACAAAAGGATTGGTGCAAGTGGTAAAATAGTTGGCTGTTTCTGTTTCTTGCAGATTGTACCACCAGACCTGCATCGGTCCTCAGAAGAACAAAGGCTACAATGCAAGGAAAGTCTTTCTGAATTTAGGGAATTAGGTTATATACTACAAGAGATAAAGAATCCTTTAAATGGCATGCGTTTCACACAGAAACTCCTGCAAAACACCGCTGTCTCAGAAAATCAGAAACAATTTCTTAATACTAGCAATGCTTGTGAGAGACAAATTATGGCAATTATTGAGGATGCAGATTTTGAAAGTATTGATGAAGGAACTTTGAAGCTAAAAATGGAGGAATTCCTTCTGGGAAATATCCTAGATGCCATTGTCAGTCAAGTCATGATCTTGATAAGAGAGAAAAACTTGCAACTCTTTCATGAAATCCCTGATGAAATCAAAACACTTGCTCTATTTGGTGATCAAATAAGGCTTCAAGTGGTCTTGTCTGACTTATTGATTAATGTAGTCTGCCACACGCCATCTCTCCATGGCTGGGTAGAAATAAAGATTTCACCTGGGCTGAAGATAATACAAGATGGAAGTGAGTTTATTCATCTGCAGTTCAGAATCACCCATGCCGGTGAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGTGGTAATCAATGGACTACACAGGAAGGTCTAGGGCTATACATGTCAAGAAAAATCCTCATTAAGATGAATGGCCATGTCCACTATGTAAGAGAACAAAACAAGTGTTACTTCCTCATCGATATTCAACTTAGAACAAGAAAAGAAAGGCAGAAGATTTTTCAAGCAGTAGAGACGAGCATGTTGTCTTAG 3327 0.4205 MKASARISDKDNAIAQYRADAGILAEYEQSGVSGKSFDYSKSVLDAPKSVSDEKMTAYLSRIQRGGLVQPFGCMLAIEEPTFRIIGYSENCFEMLGLNGKSRSKRFVNLIGVDATSLFTPSSGASLAKAAASREISLLNPIWVCSRTTQKPFYAIMHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDSVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRATHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYMEMQLAAQMADKRTLKTQTLLCDMFLRDAPFSIVTQSPSIMDLVKCDGAALLFGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGFPDAASMGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGRKMNPRLSFKAFLEVVKSKSVPWEASEINAIHSLQLIMRDSFQDAENCGPKALTHVKQEDTDMGGNGIEELSSVAFEMVRLIETATVPIFGVDSDGIINGWNAKIAELTGLQISEAMGQSLVNEVIVEDSRETVDNILKRALGGQEHKNVELKLKHFGPPQQKSVVYIMANACTSRDYKNAVVGVCFVGQDITHEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGGLCRLKGQDTLTSFTIILYQGISGQDSEKFTIRFFTRKEELVEVFLTVNKRIGASGKIVGCFCFLQIVPPDLHRSSEEQRLQCKESLSEFRELGYILQEIKNPLNGMRFTQKLLQNTAVSENQKQFLNTSNACERQIMAIIEDADFESIDEGTLKLKMEEFLLGNILDAIVSQVMILIREKNLQLFHEIPDEIKTLALFGDQIRLQVVLSDLLINVVCHTPSLHGWVEIKISPGLKIIQDGSEFIHLQFRITHAGEGLPSEILQEMFEGGNQWTTQEGLGLYMSRKILIKMNGHVHYVREQNKCYFLIDIQLRTRKERQKIFQAVETSMLS 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0588 1108 PIRSF Phytochrome_conventional 1 1098 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele36g0588 1108 Pfam His Kinase A (phospho-acceptor) domain 870 929 IPR003661 GO:0000155|GO:0007165
Lele36g0588 1108 Pfam Phytochrome region 386 561 IPR013515 GO:0006355|GO:0009584
Lele36g0588 1108 ProSiteProfiles PAS repeat profile. 721 776 IPR000014 -
Lele36g0588 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 596 704 IPR035965 -
Lele36g0588 1108 TIGRFAM sensory_box: PAS domain S-box protein 597 712 IPR000014 -
Lele36g0588 1108 CDD HATPase_Phy-like 976 1089 IPR044767 -
Lele36g0588 1108 PANTHER OS08G0260000 PROTEIN 54 926 - -
Lele36g0588 1108 ProSiteProfiles PAC domain profile. 664 720 IPR000700 -
Lele36g0588 1108 ProSiteProfiles PAS repeat profile. 590 661 IPR000014 -
Lele36g0588 1108 Gene3D PAS domain 592 720 - -
Lele36g0588 1108 ProSiteProfiles Histidine kinase domain profile. 872 1091 IPR005467 -
Lele36g0588 1108 SUPERFAMILY GAF domain-like 183 369 - -
Lele36g0588 1108 Gene3D PAS domain 737 846 - -
Lele36g0588 1108 Pfam PAS fold 57 170 IPR013654 GO:0006355
Lele36g0588 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 738 840 IPR035965 -
Lele36g0588 1108 Gene3D - 907 1083 IPR036890 -
Lele36g0588 1108 PRINTS Phytochrome signature 488 507 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 118 140 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 593 609 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 686 703 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 218 237 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 303 324 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 521 539 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 612 627 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 706 726 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 PRINTS Phytochrome signature 403 423 IPR001294 GO:0006355|GO:0009584
Lele36g0588 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 930 1087 IPR036890 -
Lele36g0588 1108 Pfam PAS fold 593 708 IPR013767 GO:0006355
Lele36g0588 1108 Pfam PAS fold 724 843 IPR013767 GO:0006355
Lele36g0588 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 203 363 IPR016132 -
Lele36g0588 1108 SMART HKATPase_4 977 1091 IPR003594 -
Lele36g0588 1108 Gene3D - 184 534 IPR029016 -
Lele36g0588 1108 SMART gaf_1 203 383 IPR003018 GO:0005515
Lele36g0588 1108 CDD PAS 601 708 IPR000014 -
Lele36g0588 1108 FunFam Phytochrome 378 508 - -
Lele36g0588 1108 FunFam Phytochrome 586 718 - -
Lele36g0588 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 62 172 IPR035965 -
Lele36g0588 1108 Gene3D PAS domain 61 306 - -
Lele36g0588 1108 SMART HisKA_10 866 929 IPR003661 GO:0000155|GO:0007165
Lele36g0588 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 977 1085 IPR003594 -
Lele36g0588 1108 SMART pas_2 592 659 IPR000014 -
Lele36g0588 1108 SMART pas_2 723 793 IPR000014 -
Lele36g0588 1108 Gene3D - 378 551 IPR043150 -
Lele36g0588 1108 FunFam Phytochrome 737 845 - -
Lele36g0588 1108 CDD PAS 735 843 IPR000014 -
Lele36g0588 1108 Pfam GAF domain 203 372 IPR003018 GO:0005515
Lele36g0588 1108 SUPERFAMILY GAF domain-like 382 559 - -
Lele36g0588 1108 CDD HisKA 862 920 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0588 Lele-ChrLele36 3909766 3914356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0588 15 1091 Histidine Kinase Gene Family AT4G18130 63.014 0.0 1443