Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0572 ATGGGGCGAGGAAGATTGGCGATGACACTGATAGAGAAAGAGAAATCCAGAAAAGCTACTTTTCAGAAGAGAAAGAATGGAATCATGAAGAAAGCTCACGAGCTCTCTACACTATGTGGAGTTGACTGTTGCTTGATCGTCTATAGCCCTAACTCCATTAACGACCTTCCTGACATTTGGCCTCCAAATCACCCTAAGGTGAATGAAATCATTGAGAAGTATAGGGCGAAGACCACTGAGAAAGGTCCAAAGAAGTATAATGTAATGGATTTCTTCAAGGACAGGAAGAACAAGGTGGATGCCGAAGCATGCAAGCTTCAGAAGGAGAGGCTCCGAAAACTCTATCCGACGTGGGATTTCTCTTTTGACAAACTCGGCGAAGAACAGCTGAGGATGTTCGTCACAATCTTGGATTCGAAGATCGAAGATTGCAAGGAGAGGATCCACATGTTGAAGAAGAAGCGCTACATAGAAGAAAAACAACAACAAGGAACAGATCAATCCTCAGACAAATCATCAGCTTCAGTTTCAAACAGAAGCCACCTCAGTTTCATGCACAACAGCAACAACACTAAGTTGTCAGCTCATCATCAAACCCTAGATTTTCTTCTCAAGTCTGAAGATCATCATCATCATCGTGTGATGCCTCATCCCTTTCATCCAAATCTGATGCCTTTGATGATGATCACGCAGAATGATTCAGCAGCAACACAGATCATTGATGCGTTTAGTCATCATTATGATCTGAGAGAATCTTGTCCTTCTTCATGCTGTTACAATAATAATAATAATAACAATTACTATCCGCCTTATCTGCAGAATAGTAATATTATGCAGTATCATCATCATGACGCAAATTTGCAGGTTCTTAATCCAGCAGCTTCTCTGATGATGCAAGAATTTTAG 906 0.4106 MGRGRLAMTLIEKEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIVYSPNSINDLPDIWPPNHPKVNEIIEKYRAKTTEKGPKKYNVMDFFKDRKNKVDAEACKLQKERLRKLYPTWDFSFDKLGEEQLRMFVTILDSKIEDCKERIHMLKKKRYIEEKQQQGTDQSSDKSSASVSNRSHLSFMHNSNNTKLSAHHQTLDFLLKSEDHHHHRVMPHPFHPNLMPLMMITQNDSAATQIIDAFSHHYDLRESCPSSCCYNNNNNNNYYPPYLQNSNIMQYHHHDANLQVLNPAASLMMQEF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0572 301 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele36g0572 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Lele36g0572 301 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lele36g0572 301 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele36g0572 301 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele36g0572 301 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lele36g0572 301 PANTHER MADS BOX PROTEIN 3 149 - -
Lele36g0572 301 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Lele36g0572 301 MobiDBLite consensus disorder prediction 158 178 - -
Lele36g0572 301 CDD MADS 2 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0572 Lele-ChrLele36 3727756 3729122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0572 1 147 Type I MADS-box Gene Family AT5G55690 37.086 1.06e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele36g0572 SRF-TF 2.2e-20 No_clan