Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0543 ATGGCGAAGGAAGCTACGAGGTCGCGAAAGAGGTCTCTCTCATCGCCCTCTGCTTCTACTTCTGATGAACGTTCTACACTAACTTCTTCTGACGGGATAGTGTTGAGGGTAAAATTCAATGACGGGATGAAGAGATCTTCCCAGCTGACTAAGTCAGGGAAGAAATCCAAAGCCAAGCAAAAGAAGATTAACAAAAAGCTTGATGCTAAGAAACCAAAGAAACCCCCAACTGCTTTCTTCTACTTCTTGGAGAATTTTCGTAAAGAATTTCAAGAGCGGAATCCAGATGTCAAGTCAATGCGTGATATCGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCCACAGAAAAACGAGCAGAATTCGACAGAGCAATGATCGAATATAACAAAAAAATGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCAGAGTTTGATGATGCATAA 486 0.4115 MAKEATRSRKRSLSSPSASTSDERSTLTSSDGIVLRVKFNDGMKRSSQLTKSGKKSKAKQKKINKKLDAKKPKKPPTAFFYFLENFRKEFQERNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEYEETDEESEFDDA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0543 161 MobiDBLite consensus disorder prediction 1 29 - -
Lele36g0543 161 Gene3D High mobility group box domain 65 156 IPR036910 -
Lele36g0543 161 MobiDBLite consensus disorder prediction 11 29 - -
Lele36g0543 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 157 IPR031061 -
Lele36g0543 161 MobiDBLite consensus disorder prediction 50 69 - -
Lele36g0543 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
Lele36g0543 161 SMART hmgende2 71 142 IPR009071 -
Lele36g0543 161 CDD HMGB-UBF_HMG-box 77 137 - -
Lele36g0543 161 Pfam HMG-box domain 69 141 IPR009071 -
Lele36g0543 161 MobiDBLite consensus disorder prediction 42 74 - -
Lele36g0543 161 SUPERFAMILY HMG-box 65 146 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0543 Lele-ChrLele36 3524589 3533688 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele36g0543 HMG_box 7.4e-17 CL0114