Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele36g0541 | ATGAAGTACTCACATACAAATGTATGTCTATCATTGAGTACTTGTGATCAATCAATTTTTATTGGCCCTGTGCACTTCTATAGGACGAAACACGTAGCCAATTCTGAGACGAAGATCTCGTGCTTGAGAAAGGGAGTTGGCCAACAAGATACGGAAGGGTTTTGTGGCTGTGTCGCCGCCGTCACGCGCCAGAATGGGGTTGCCTTCGGTCAGGAGGTATCGGCGAGGGGGAAAGAAAAAGGAGCCATCTTCCATCTTACTTTCACTCTCGTTCGGAGTCGGAGGCAAGCAGAAGGTGAAGAAATGGATATTAGCGAAGATGTTAGGGCAGCTCACAAACGAGAATTCGCCGATTTCCTGGATCAGGATGTTGGGAAAGGGATATACATGGACGAGATCAAAGCAATGATCAACCACAAGCGCCGTCGCCTCATCGTCAATATCTCCGATCTTCATAGCTTTCGTGATTTGGGTAATAGGATTCTCAGGAACCCTAGTGAGTACATACAATCATTCTGTGATGCAGTGACGGATGCTGCTCGTGCTATTGACACCAAGTATTTGAAGGAAGGAGAACAAGTGCTTGTAGGATTTGAAGGTCCTTTTGTTTCCCGTCGTGTCACCCCAAGGGAGCTTCTATCTGAATTCATAGGTTCCATGGTTTGCGTCGAGGGCATTGTTACTAAATGTTCGCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCACTTCTGCCCCACAACTAAAAAATTTACCAGTCGCGAATATCGTGATATTACTTCCAATATGGGTTTGCCCACAGGCTCTGTTTATCCCACAAGGGATGAAAGTGGCAACTTATTGGTGACCGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTATCCATGCAAGAAGTTCCTGAGAATTCTGCACCTGGTCAGCTTCCAAGAACAGTAGATGTGATAATAGAGGATGACCTTGTTGACTCTTGCAAACCTGGGGATCGTGTAGCTATTGTGGGGATATATAAGGCGCTTCCAGGGAAAAGTAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTGTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATCTGAAAAACATAAAGAAGATTGCTGAAAGAGATGATGCATTTGACCTACTTGGTAATTCACTTGCACCTTCTATTTATGGGCATTCCTGGATAAAGAAAGCGGTGATTTTGTTGTTGCTCGGTGGAGTCGAAAAGAACTTAAAGAATGGTACCCATTTGCGAGGTGACATTAACATGATGATGGTTGGTGATCCGTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATCATGAATATTGCTCCCTTGGCAATATCTACTACAGGTCGGGGTTCTTCTGGGGTTGGTTTAACCGCAGCGGTTACTTCTGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGAGCGATGGTTCTTGCTGATCGAGGTGTTGTATGCATTGATGAGTTTGACAAAATGAACGATCAAGATCGGGTTGCTATACATGAAGTTATGGAGCAGCAAACTGTAACTATAGCCAAAGCTGGTATCCATGCGTCTCTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGACCGATCATTGACTCCAACAAAAAATATTGGACTCCCAGACTCCTTGCTTTCCCGATTTGATCTTCTGTTTATTGTCTTGGATCAAATGGACCCTGATATTGATCGTCATATCTCAGAGCATGTCTTGCGTATGCATCGATACCGTTCTGCCATTGATGGAGGTGAGGCAGCATTTGATGTTGCCTCAAGATATGGAAGAGAAGAGGACGCCGACACTGACTCGGCTGTCTTTGTCAAATATAACCGGATGCTACATGGAAAGAAAATAGAAAAAGGCCGCAAGCGCGATGTTCTCACAATCAAGTTTCTTAAAAAGTATATTCATTATGCCAAGCATAGGATTCAACCTGAACTTACTGATGAGGCATCTGACCACATTGCCACAGCTTATGCTGAGCTCAGAAATGCTGGTTCAAATGCTACGACTGGAGGAACCCTTCCTATCACCGCTAGAACTTTGGAAACCATAATACGTCTCTCAACGGCTCATGCCAAACTAAAATTGAGCAGACAGGTTTTTAAGTCCGATGTTGAAGCTGCTCTGAAAGTTCTTAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAGGAACGTGAGCATGAGAGGGAGAGAGAAATGGAGAGGAAACGCAGGGCTGAGCAGCATCCTGGTGAAAATGATGAACCTAGTCGAGGTCCTAAAAATAGAAGAACTTCCACAGCTGAAGCCATGGAAGTTGACGAGACTTCGGCAGCCCAATCTGCTACCGGTCTCACACCTGAAAGAATCGAAGCGTTCAATTCTTTATTTGGTCAGCATATGCGTACCAATCGCTTGGATCTCATATCCATTTCAGATATAGAGAATGTTGTCAACCAAGGGACAGAATCCAGTTTCAGCAGAGAAGATATATTATTCCTATTAGAGAAATTGCAAGATGACAATAGAGTGATGATAGCTGACGGAGCGTTAATTTTTTGCATTCCGATTGTAGAATCACCAAGCACCGACATGGTTTCCCGAAATCAACCCAAAGATGACATCCCTAAGAAGCAATGGTCCTTGAGAGACTTTGAGATCGGAAAACCCCTTGGAAAGGGGAAATTCGGTAGAGTCTACGTCGCTCGAGAAGTCAAGAGCAAATATATTGTGGCGCTCAAGGTTATCTTTAAGGAACAAATGGAAAAGTACAAAATTCATCATCAACTGAGGAGAGAGATGGAGATTCAAACCAGTCTTCAGCACCCCAACGTTCTGCGTCTCTATGGTTGGTTTCATGATGCTGAACGGATTTTCTTGATACTTGAGTATGCTCATAATGGTGAGCTTTACAAGGAGCTCAGAAAAAAAGGTTATCTCAATGAGAAGCAAGCAGCCACGTATATTTTGAGCCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTCATTCATAGGGATATAAAGCCCGAGAATTTGTTACTTGACCATGAGGGTCGCCTTAAAATTGCAGACTTTGGTTGGTCTGTACAGACAAGAAGTAAGAGACATACCATGTGTGGAACATTGGATTATCTAGCACCAGAAATGGTAGAAAACAAAGAACATGATTTTTCTGTTGATAACTGGACTCTGGGTATACTTTGTTATGAATTCCTCTATGGTTCTCCCCCATTTGAGGCTGAGAGTCAAGTTGACACGTTCAAGAGGATAATGAAGATTGACCTAAATTTCCCTTCTACTCCTACTGTTTCTTCAGAAGCCAAAAATCTGATTAGCCGGCTCTTGGTGAAAGATTCCACTAGAAGGCTATCACTTCAGAAGATTATGGAGCATCCTTGGATACTCAAGAATGCTGATCCTACGGGTGTCTGCAATAAATAA | 3513 | 0.4318 | MKYSHTNVCLSLSTCDQSIFIGPVHFYRTKHVANSETKISCLRKGVGQQDTEGFCGCVAAVTRQNGVAFGQEVSARGKEKGAIFHLTFTLVRSRRQAEGEEMDISEDVRAAHKREFADFLDQDVGKGIYMDEIKAMINHKRRRLIVNISDLHSFRDLGNRILRNPSEYIQSFCDAVTDAARAIDTKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTKKFTSREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIIEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDLKNIKKIAERDDAFDLLGNSLAPSIYGHSWIKKAVILLLLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSAIDGGEAAFDVASRYGREEDADTDSAVFVKYNRMLHGKKIEKGRKRDVLTIKFLKKYIHYAKHRIQPELTDEASDHIATAYAELRNAGSNATTGGTLPITARTLETIIRLSTAHAKLKLSRQVFKSDVEAALKVLNFAIYHKELTEMEEREHEREREMERKRRAEQHPGENDEPSRGPKNRRTSTAEAMEVDETSAAQSATGLTPERIEAFNSLFGQHMRTNRLDLISISDIENVVNQGTESSFSREDILFLLEKLQDDNRVMIADGALIFCIPIVESPSTDMVSRNQPKDDIPKKQWSLRDFEIGKPLGKGKFGRVYVAREVKSKYIVALKVIFKEQMEKYKIHHQLRREMEIQTSLQHPNVLRLYGWFHDAERIFLILEYAHNGELYKELRKKGYLNEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQTRSKRHTMCGTLDYLAPEMVENKEHDFSVDNWTLGILCYEFLYGSPPFEAESQVDTFKRIMKIDLNFPSTPTVSSEAKNLISRLLVKDSTRRLSLQKIMEHPWILKNADPTGVCNK | 1170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele36g0541 | 1170 | FunFam | DNA helicase | 106 | 205 | - | - | |
| Lele36g0541 | 1170 | ProSiteProfiles | MCM family domain profile. | 390 | 596 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 559 | 569 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 592 | 602 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 731 | 746 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 282 | 296 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 308 | 320 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0541 | 1170 | ProSitePatterns | MCM family signature. | 499 | 507 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele36g0541 | 1170 | CDD | MCM3 | 393 | 742 | - | - | |
| Lele36g0541 | 1170 | SMART | AAA_5 | 432 | 585 | IPR003593 | - | |
| Lele36g0541 | 1170 | MobiDBLite | consensus disorder prediction | 751 | 792 | - | - | |
| Lele36g0541 | 1170 | Pfam | MCM OB domain | 210 | 340 | IPR033762 | - | |
| Lele36g0541 | 1170 | ProSiteProfiles | Protein kinase domain profile. | 907 | 1158 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele36g0541 | 1170 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 400 | 755 | IPR027417 | - | |
| Lele36g0541 | 1170 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1026 | 1038 | IPR008271 | GO:0004672|GO:0006468 | |
| Lele36g0541 | 1170 | Gene3D | Phosphorylase Kinase; domain 1 | 896 | 990 | - | - | |
| Lele36g0541 | 1170 | SUPERFAMILY | Protein kinase-like (PK-like) | 892 | 1162 | IPR011009 | - | |
| Lele36g0541 | 1170 | FunFam | DNA helicase | 236 | 290 | - | - | |
| Lele36g0541 | 1170 | Gene3D | Transferase(Phosphotransferase) domain 1 | 991 | 1166 | - | - | |
| Lele36g0541 | 1170 | CDD | STKc_Aurora | 906 | 1159 | - | - | |
| Lele36g0541 | 1170 | Pfam | Protein kinase domain | 907 | 1158 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele36g0541 | 1170 | Gene3D | - | 372 | 765 | IPR027417 | - | |
| Lele36g0541 | 1170 | Pfam | MCM P-loop domain | 378 | 600 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | FunFam | Aurora kinase A | 899 | 990 | - | - | |
| Lele36g0541 | 1170 | Coils | Coil | 748 | 771 | - | - | |
| Lele36g0541 | 1170 | MobiDBLite | consensus disorder prediction | 751 | 805 | - | - | |
| Lele36g0541 | 1170 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 106 | 786 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | Pfam | MCM AAA-lid domain | 657 | 740 | IPR041562 | - | |
| Lele36g0541 | 1170 | Gene3D | - | 210 | 340 | IPR012340 | - | |
| Lele36g0541 | 1170 | ProSitePatterns | Protein kinases ATP-binding region signature. | 913 | 940 | IPR017441 | GO:0005524 | |
| Lele36g0541 | 1170 | Gene3D | - | 236 | 290 | - | - | |
| Lele36g0541 | 1170 | SMART | serkin_6 | 907 | 1158 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele36g0541 | 1170 | Pfam | MCM N-terminal domain | 113 | 184 | IPR027925 | - | |
| Lele36g0541 | 1170 | SMART | mcm | 205 | 744 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 491 | 505 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 519 | 532 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 570 | 578 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 543 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 431 | 446 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0541 | 1170 | SUPERFAMILY | Nucleic acid-binding proteins | 114 | 360 | IPR012340 | - | |
| Lele36g0541 | 1170 | Gene3D | - | 103 | 200 | - | - | |
| Lele36g0541 | 1170 | FunFam | Serine/threonine-protein kinase ark1 | 899 | 1169 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele36g0541 | Lele-ChrLele36 | 3505500 | 3515505 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele36g0541 | 102 | 676 | Core DNA Replication Machinery Family | AT5G46280 | 81.282 | 0.0 | 962 |
Transcription factors information