Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0538 ATGGGCGAGGAAGGCAAGAAGAGGGGTGTCGTCACCGATGCCCCCAACCAGCCTTACTATGGCACCTTTCAAGGCGTCGCCAACTACTATCCGACTGCTCCACCTCCACCGCCGCAGCCGCAGCTGCTCCCTGTGGTAGGATTTCCTCAGCCTATTCCGCCACCAGCAACGTACAGTGGTCATTATTACCAAGGATATCAAACCGTTCCGGGTTATGTTGTTGCTGAAGGAAGGCCCATAAGAGAACGCCGTCTTCCTTGTTGTGGACTTGGTCTGGGTTGGTTCTTGTTTATAACGGGATTCTTTCTTGGTGGCATTCCCTGGTATGCTGGAACTCTTGTTCTACTATGTGCACAGATGGATTACCGAGAAAAGCCTGGATTAGTTGCATGCACAGTTGCCTCAATCATTGCTATCATAGCTGTGACTCTTGGTCTTACAAATAAAGCTCATGACTGATTAGCAGATGTTAATGGAGAGAGGCACCAGAGTCCTTGCTGTGTTCCTCTTCTCTTGGAGATGGTTGCTTTCAGGTTCCACCAGTACCAGGTCGTTGGGAGGGCTTTGCCCACAGAAGCAGATGAACACCCAAAGATTTACCGCATGAAACTCTGGGCTACGAACGAGGTTCGCGCCAAGTCGAAGTTCTGGTATTTTTTGAGGAAACTGAAGAAGGTTAAGAAAAGCAATGGTCAAGTGCTCGCCATCAATGAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACTATGGCATCTGGTTGCGTTATCAGAGTAGGACTGGTTATCACAACATGTACAAAGAGTACCGTGATACCACTCTAAACGGTGCAGTCGAGGCCATGTACACTGAGATGGCTTCCCGTCACAGGGTCCGGTTCCCTTGCATTCAAATCATCAAGACAGCCACCATCCCAGCTAAGCTTTGCAAAAGGGAGAGCTCCAAGCAGTTCCACAACTCAAAAATCAAGTTCCCGTTGGTTTACAGGAAAGTCAGGCCACCCACCAGGAAGCTTAAAACCACATACAAGGCCAAAAAGCCCAACTTGTTTATGTAA 1056 0.4848 MGEEGKKRGVVTDAPNQPYYGTFQGVANYYPTAPPPPPQPQLLPVVGFPQPIPPPATYSGHYYQGYQTVPGYVVAEGRPIRERRLPCCGLGLGWFLFITGFFLGGIPWYAGTLVLLCAQMDYREKPGLVACTVASIIAIIAVTLGLTNKAHDXLADVNGERHQSPCCVPLLLEMVAFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYRKVRPPTRKLKTTYKAKKPNLFM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0538 351 SUPERFAMILY RplX-like 244 319 - -
Lele36g0538 351 Gene3D - 244 316 - -
Lele36g0538 351 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 180 301 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele36g0538 351 Hamap 50S ribosomal protein L18Ae [rpl18a]. 179 242 IPR028877 -
Lele36g0538 351 Gene3D - 171 243 - -
Lele36g0538 351 MobiDBLite consensus disorder prediction 1 22 - -
Lele36g0538 351 PANTHER 60S RIBOSOMAL PROTEIN L18A 176 350 IPR028877 -
Lele36g0538 351 FunFam 60S ribosomal protein L18a 245 320 - -
Lele36g0538 351 FunFam 60S ribosomal protein L18a 174 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0538 Lele-ChrLele36 3484211 3489616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0538 173 351 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.620 5.38e-121 346