Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0494 ATGTTATTAGATGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTCAGATTCAAGAACTTTGGTGAGTCTGGTTATCCTGTGCAGTTTAAAGGGCCATTTCGTGAGAACGTTAATGCTTTGCTTGAGTTTGCCAATTCTGAGTCTAAATACTTAGGCTTTGGAATGCCCATTTGGTCTTTCCAACTTGAAGTTCATCGCCACCCTCCTTCTCATATCTTCTTGTTTGTCATCGAAGAAGCCACTGAAACATCTATGAACCGCCACTGCAAACACTGTCAATATGTTGGATGGGGGAATCATTTGATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACATTGGCTGCGAGTTTGAGCTGCGAAGTGCCGTGTGAAGGAATTACTACTGGAGCAGCTATGAGCAACAATATTAATAACGGTAAGTCAAAATTAATAGAATTACAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGGCATTTGCTCTGTGTCAATGGCCTCGAAACTGGGTCGGATCTAGCCGGACATCACATCATGGACTTTTGGGATCGCTTGTGCACGGGACTGCAAGCAAGGAAAGTGAGTTTGAATGACGTGTCACAGAAAAAAGGCATGGAATTAAAACTTATCAATGGAATAGCATATGGTGAACCATGGTTTGGAAGGTGGGGCTACAAATTTGGAAGAGGATGCTTTGGTGTGACTCAATCTACATACCAGAAAGCCATTGAAGCAATAAGAAGCATCCCACTTTACCTTCTGAATAGCCACCAAATTGCCAACTTTTCTTCCTACCATGACATACCAATCATCTTCTCAAGGTACCAAACACTCTCTGATCAAACCCTAGTTACACTTGGTGACCTATTCCACTTCATGTTGGAGCTCAAGTCTCACCTTCCTCACCGCGAAAACTACGCCGCTGCCACTGATCCCTATAAGACCGGCAGCTTCTCCGTCGAAGCCAATTGCCGTTGGTCCCCGAAAAGAATCGAGATGGCAACTAGGGTTATTGTTGAAGCCTTGAAAAGAGCTGAGTTCAGGTGGATTTCAAGGCAAGAGGTTAGAGATGCTGCTCGAGCCTACATCGGCGACACCGGTTTGCTAGATTTCGTGTTGAAATCTTTGGGAAATCACGTTGTTGGCAATTATATGGTTCGTCGAAGCTTGAATCCTGTCACGAAAGTTCTTGAATATTGCTTGGAAGACATCTCCAATATTGTTTTCCCCACTCATCATCATCAACAAGAAGGTAATAATAATAATAATAATAACACTAAAAGAAGCATAAGGGACAGGTACAAAATCACTAGGGCTCAAGTAACGAAGGACATGTTTTATTTGTATAAGCACATCCTTAAAGACCCAAAACAAATTACCCAAGGATCGATTTTCTCAGCAATCCCATTGGCAGTAAGGATAATTATGGATACTAAGTATCTGATCAAAGACTACTTTGGGGAGCTTCCATTTCAAGCTGATCTTGGGATGGACGGAAAACTAAGTCTTCACTGTACAATAATGTTGAGAAATTACAACAACAACAATAATACCTTAATGATGCCACCGTACGAGTGTATCACGTTGAAGAGTAGCGCCACCATTAATGAGCTGAAGCAAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAGTTTTTGTGTGGATTCGATTAAGAACTTGGAAGTTTGTGGTCGGAATGATCTGGTTTTTGGGATGGTGGAAGTGGGAAGAAAGCTAGTGGTTGAAGGATGGATTGATAATAATAATGTTAATGTTAATGGGGACAAGAACATAAGTAACAACAACATAGGAGAGATTTGTGAGGTTGATGAGAATTATGGGATGGTTGTGGAATGTAGTTGTGGGACTAAGGAAGACGACGGAGAGAGAATGGTGTCTTGTGATATTTGTGAAACGTGGCAGCATACGAGGTGTGTTAGGATTCCGAATGATGAACAAGTTCCTTCAATATTTCTCTGCAAAAGATGTGAACGAGAAATTGTTATGTTCCCTTCCTTGCCATAG 2070 0.4159 MLLDVEVMGNKKRKRCGRVFRFKNFGESGYPVQFKGPFRENVNALLEFANSESKYLGFGMPIWSFQLEVHRHPPSHIFLFVIEEATETSMNRHCKHCQYVGWGNHLICNKKYHFVLPSKETLAASLSCEVPCEGITTGAAMSNNINNGKSKLIELQGHMMQAVFHSNGFGHLLCVNGLETGSDLAGHHIMDFWDRLCTGLQARKVSLNDVSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTQSTYQKAIEAIRSIPLYLLNSHQIANFSSYHDIPIIFSRYQTLSDQTLVTLGDLFHFMLELKSHLPHRENYAAATDPYKTGSFSVEANCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYMVRRSLNPVTKVLEYCLEDISNIVFPTHHHQQEGNNNNNNNTKRSIRDRYKITRAQVTKDMFYLYKHILKDPKQITQGSIFSAIPLAVRIIMDTKYLIKDYFGELPFQADLGMDGKLSLHCTIMLRNYNNNNNTLMMPPYECITLKSSATINELKQEVERNFREIYWGLRSFCVDSIKNLEVCGRNDLVFGMVEVGRKLVVEGWIDNNNVNVNGDKNISNNNIGEICEVDENYGMVVECSCGTKEDDGERMVSCDICETWQHTRCVRIPNDEQVPSIFLCKRCEREIVMFPSLP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0494 689 CDD PHD_MMD1_like 633 678 - -
Lele36g0494 689 ProSitePatterns Zinc finger PHD-type signature. 634 678 IPR019786 -
Lele36g0494 689 Pfam PHD-finger 634 680 IPR019787 -
Lele36g0494 689 SMART PHD_3 633 679 IPR001965 -
Lele36g0494 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 685 IPR013083 -
Lele36g0494 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 683 - -
Lele36g0494 689 ProSiteProfiles Zinc finger PHD-type profile. 631 681 IPR019787 -
Lele36g0494 689 SUPERFAMILY FYVE/PHD zinc finger 621 681 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0494 Lele-ChrLele36 3099160 3101729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0494 11 689 PHD Transcription Factor Family AT5G22260 51.289 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele36g0494 PHD 2.1e-09 CL0390