Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0485 ATGGGGCGTTCTCGTGGGAATTTCCACGCTGATGAGGACCCCAATCAAAGGTCAAGGAGAAAAAAGAATGCTGCTAGTGGGGATATTTCAGAACCTGGATCTGCAGGTCAAGGAACAAGTGAAGGAAAAAAAGCTTTGTACCATTGCAATTACTGTAACAAAGATATTACAGGAAAAATACGTATTAAGTGTGCCATGTGCCCTGATTTTGACCTATGTATAGAGTGCTTCTCTGTGGGAGCTGAGGTGACACCTCATAAAAGCAATCACCCTTACAGGGTTATGGACAATTTATCTTTCCCCCTCATTTGCCCAGATTGGAATGCAGATGATGAAATTCTGCTTCTGGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGAAGTTGCTGAGCATGTTGGGACAAAGAATAAAGAAGCATGCATAGAACACTATAGGAATGTTTACTTGAATTCCAAAACCTTTCCTCTCCCGGACATGTCCCATGTTGTTGGAAAAAACAGAAAGGAGCTGCTTGCTATGGCTAAAGGGCAAGCTGATGACAAAAAAGGGATTCCTATGGGGGATCTTGGTATAAAGGAAGAATCTCCATTATCTCCAGCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGGCAATTCTAGCCGTTTACAGTCCAACTTAAATTCAGAATCAGAATCTGGACCCTCTAGTGGCTCTCATACTGCTGCAACTGCTAACCAGAGGGCATCTAATGTGGGACGGGGCAAAGATGGTCCTGGAGTTATTAAAATGGAAGATCCTCAACTAGAAAAATATTCTGGAGGAAACAAGCCAAGTTTGTCTGGAAATGAAGGTCCTTCTTTAGTAGAGTTGAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAATTGCTTGCTGAAATGGAATTTAAGGACACTGACACAGATGATGAACGGGAACTGAAACTACGCATTCTGCGTATATATTCGAAAAGGCTTGATGAAAGAAAGAGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCTTTTGAGAAGGATTTAACACGTGAAGAGAGGACAATATGTCAAAAATATAATGTTTTCATGCGCTTTCATACCAAGGAAGATCATGAGGAATTGCTTAGAGTAGTAATCTCTGAGCACAGAGCTCGTAGAAGAATTGAAGAGCTTCAGGAGGCCCGAGCTGCTGGTTGCCGCACAGCGGCCGAAGCAGATAGATATCTTGAACAAAAGAGAAGAAGAGAGGCAGATGAAAGTGCTCTTAGGTCAAAAGAAAGAGCTCAAGCTGGTCCAAACGATCATGGGGTTCCAAGTGCATTCATGTCTCCAGACTCTGCTGGCAAGGATTCAAGTGCGAGACCAGCAGGGCCCGCTGGTTCAAGCTCTGTCAATGAAATGGATGTGACAGGATATTATGGGGCTGATCTACTTTCTGTACCTGAAAAACGTCTATGCTGTGAACATAGGTTGCCTCCAGCCATCTTCCTGAAGATGCAAGAGATTCTATCTGTACAAATACTGAGTGGCAATATCACTGCAAAATCTGATGCCCACCACTTGTTCAATATGGATAGCAGCAAGATTGATTGCGTATACGATATGCTCGTGAAGAAGGGGATTGTTACGCCCTGA 1674 0.4265 MGRSRGNFHADEDPNQRSRRKKNAASGDISEPGSAGQGTSEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNVYLNSKTFPLPDMSHVVGKNRKELLAMAKGQADDKKGIPMGDLGIKEESPLSPARVKVEDSHKAGNSSRLQSNLNSESESGPSSGSHTAATANQRASNVGRGKDGPGVIKMEDPQLEKYSGGNKPSLSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRILRIYSKRLDERKSRKDFILERNLLYPNPFEKDLTREERTICQKYNVFMRFHTKEDHEELLRVVISEHRARRRIEELQEARAAGCRTAAEADRYLEQKRRREADESALRSKERAQAGPNDHGVPSAFMSPDSAGKDSSARPAGPAGSSSVNEMDVTGYYGADLLSVPEKRLCCEHRLPPAIFLKMQEILSVQILSGNITAKSDAHHLFNMDSSKIDCVYDMLVKKGIVTP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0485 557 ProSiteProfiles SWIRM domain profile. 471 557 IPR007526 GO:0005515
Lele36g0485 557 Gene3D - 38 95 IPR043145 -
Lele36g0485 557 SMART sant 103 152 IPR001005 -
Lele36g0485 557 SUPERFAMILY Homeodomain-like 464 555 IPR009057 -
Lele36g0485 557 FunFam Transcriptional adapter 2 472 556 - -
Lele36g0485 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Lele36g0485 557 FunFam Transcriptional adapter 2 100 152 - -
Lele36g0485 557 CDD ZZ_ADA2 47 95 IPR041983 -
Lele36g0485 557 Pfam Zinc finger, ZZ type 45 87 IPR000433 GO:0008270
Lele36g0485 557 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Lele36g0485 557 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Lele36g0485 557 CDD SANT 107 149 IPR001005 -
Lele36g0485 557 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 552 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 269 283 - -
Lele36g0485 557 Gene3D - 472 556 IPR036388 -
Lele36g0485 557 SMART zz_5 43 88 IPR000433 GO:0008270
Lele36g0485 557 PIRSF Txn_adaptor_ADA2 34 557 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lele36g0485 557 MobiDBLite consensus disorder prediction 176 190 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 176 259 - -
Lele36g0485 557 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Lele36g0485 557 SUPERFAMILY RING/U-box 47 109 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 264 283 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 423 478 - -
Lele36g0485 557 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Lele36g0485 557 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Lele36g0485 557 MobiDBLite consensus disorder prediction 423 443 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 1 41 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 213 246 - -
Lele36g0485 557 Gene3D - 101 152 - -
Lele36g0485 557 MobiDBLite consensus disorder prediction 1 26 - -
Lele36g0485 557 FunFam Transcriptional adapter 40 95 - -
Lele36g0485 557 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0485 Lele-ChrLele36 3044693 3049560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0485 1 554 EF-hand Containing Proteins AT3G07740 47.323 4.54e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele36g0485 Myb_DNA-binding 2.9e-11 CL0123