Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0475 ATGGGCCCTGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGCGATGTGGTGGAAGCGGTGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTCATTGTTTTCTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATCGATGGTAGAACTGTTGAAGCCAAAAAGGCCATCCCTAGGGATGATCAGAACATTTCTAACAGAAGCAACAGCAGTATTCATGGATCACCTGGTCCAACCCGTACAAAGAAGATATTTGTTGGAGGTCTTGCGTCCACAGTTACTGACAGTGACTTCAAGAAGTATTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAGGTTCTGTATAGAACATTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCGAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATATCTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATAGTTTCATTCAGGGATATAATCCTAGCTTGGTTGGAGGGCATGGACATAGGGCAGATGGCAGATTTAGTCCTGTTACTGCTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGGTTCAATTTTGAACCAGCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTTCCCTTATGTTAGGACGAGCTTTGAACCCTTCATATGGAAACTCAAGCAGGTACCACAATGTCATGGGGTATACTGGTACAAGTGTAGGAAACAATTCAGCAAATCAGAATTTGTGGGGGAACGAGAACATTAGCTTTGCTAATAATCCTACAAATTCTGATGGTTTTCATGGGTATGGAAGTCAAAATTCAGGCATGGGTTCTTTTGGTGATATTGGAACACTGTGGAGTTCCTCCCCTAGTGCAGATCAAGCTGGAACTGTTGGCTCTGGCTATGGTAAGGGCACTCTCAACTATGGCCGCGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATATGGAAAAGGTAGTGATGCCATTGCTGAATCAGTGTCATCTTATGCCCTATCCAATGGCAGTTTTGATGGGGCATATAAAGACATTTACGAAGCTGGGTCATTTTTTGGTGACCACACCTGGAGATCATCACCCTCGGAACTAGAAGATACCGGTTCTCTTGGTTATGACCTTGGAAATTCTGTTTCAGATTTGATAAGCAAAAGCTCTGGTGGCCACATTGAGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGTAGGTACCATGTGTTTGATATCAATGTGCTCCAATTTCTCAACTGTTCTTTCAAAATTCTTTACTTTTCATGGCATAGCTAA 1479 0.4206 MGPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAIPRDDQNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTDSDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYRTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYIYGLSRVSGFSNSFIQGYNPSLVGGHGHRADGRFSPVTAGRNGYPPLSPSYGTGFNFEPAFSQNGNSNLTSSLMLGRALNPSYGNSSRYHNVMGYTGTSVGNNSANQNLWGNENISFANNPTNSDGFHGYGSQNSGMGSFGDIGTLWSSSPSADQAGTVGSGYGKGTLNYGRGDVNFRPKAVGYGKGSDAIAESVSSYALSNGSFDGAYKDIYEAGSFFGDHTWRSSPSELEDTGSLGYDLGNSVSDLISKSSGGHIEAYAVANRQSNRGRYHVFDINVLQFLNCSFKILYFSWHS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0475 492 SUPERFAMILY RNA-binding domain, RBD 103 235 IPR035979 GO:0003676
Lele36g0475 492 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Lele36g0475 492 MobiDBLite consensus disorder prediction 78 100 - -
Lele36g0475 492 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 465 - -
Lele36g0475 492 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 85 - -
Lele36g0475 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Lele36g0475 492 MobiDBLite consensus disorder prediction 84 99 - -
Lele36g0475 492 Gene3D - 4 86 IPR012677 -
Lele36g0475 492 SUPERFAMILY RNA-binding domain, RBD 4 99 IPR035979 GO:0003676
Lele36g0475 492 CDD RRM2_DAZAP1 102 181 IPR034131 GO:0003723
Lele36g0475 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lele36g0475 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 163 IPR000504 GO:0003723
Lele36g0475 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Lele36g0475 492 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lele36g0475 492 SMART rrm1_1 105 177 IPR000504 GO:0003723
Lele36g0475 492 Gene3D - 101 187 IPR012677 -
Lele36g0475 492 FunFam Heterogeneous nuclear ribonucleoprotein 1 101 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0475 Lele-ChrLele36 2965449 2967640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0475 2 251 Eukaryotic Initiation Factors Gene Family AT2G36660 19.691 2.54e-06 48.1