Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0473 ATGGTTTCTCTGGAGGATTCTCATTCCAATTCCAATCGTTTCCCTTTAACCCGAAGTTATTACTCTACTACCACTTCTGCCAACAATTCTTCATCCAGAATCCAGCGACACACTGGAAGGTCTATGCGAACTGTACGCTCTAATTTCTTCCAGGATGACCATAGCAGCTCCTTCACCACAGCCACCGAGAAATCTACTTGCCTGTCGGAAAGCATGACTGATTCGATCATCGACCTCCAGCTTGGCGAGCTCGCATCGAAGAATAGCAAATCTGCGAAATATTCTACTACAGAGGAGGAGTTGATTGATCTTTCTCAAGCTTTCAGTGATTTCTTGGCTTGTGGCAGCGATATTTCCGGGGAGCTGCAGAGGTTGGCGAGTTTGCCGTCGCCGGAGAATGTGCCGAAGGGCGATGCCAGTGGTGAAGCAGAGGAGCTGGAGCCGTGCCTGGGTTTCCTGCAGAGAGAGAATTTCTCTACTGAGACTATTGAGAGTATTTCGCCTGAGGATCTTCAGCCGACGGTGAAGATCTGTGTCGATGGGCTACAGTCACAGTCGGTTGCTGTGAAGCGATCCGCTGCGGCTAAGCTCAGGCTTCTGGCTAAGAATCGGGCGGATAATAGAGCTTTGATCAGTGAGTCTGGTGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGCTGAATCTCTCTCTCCACCAAGATAACAAGATGCTGATTACCAATGCAGGAGCTATTAAGTCACTGATTTATGTGCTCAAAACCGGAACAGAGACATCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCGTTGGTTGAAGAAAACAAGAGTTCCATTGGGGCTAGTGGGGCAATACCACTGCTTGTTTCCTTGCTATTGAGTGGTTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGCTGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGAGCGGTGAGCGCCGGAGCAGTGAAGCCTCTCTTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAATAGCTTGGCCGCTATTCCGGAAGGGAAGGAAGCAATTGTTGAAGAAGGTGGAATAGCTGCACTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACACTTCTACAGCTATGTGCTGACAGTGTGAGGAATAGAGGGTTGCTTGTGAGGGAGGGTGGAATACCCCCTCTGGTTGCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCATAAGGCAGAAACGCTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCATCCACTTCAAGTCCTTAG 1383 0.4996 MVSLEDSHSNSNRFPLTRSYYSTTTSANNSSSRIQRHTGRSMRTVRSNFFQDDHSSSFTTATEKSTCLSESMTDSIIDLQLGELASKNSKSAKYSTTEEELIDLSQAFSDFLACGSDISGELQRLASLPSPENVPKGDASGEAEELEPCLGFLQRENFSTETIESISPEDLQPTVKICVDGLQSQSVAVKRSAAAKLRLLAKNRADNRALISESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHQDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPLLVSLLLSGSSRGKKDALTTLYKLCSIKPNKERAVSAGAVKPLLEMVAEQGTGMAEKAMVILNSLAAIPEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLGYLRESRQEASTSSP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0473 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Lele36g0473 460 SUPERFAMILY ARM repeat 152 449 IPR016024 -
Lele36g0473 460 FunFam U-box domain-containing protein 4 161 313 - -
Lele36g0473 460 PANTHER U BOX DOMAIN-CONTAINING 133 448 - -
Lele36g0473 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Lele36g0473 460 FunFam U-box domain-containing protein 4 314 455 - -
Lele36g0473 460 Pfam Armadillo/beta-catenin-like repeat 206 243 IPR000225 GO:0005515
Lele36g0473 460 Pfam Armadillo/beta-catenin-like repeat 288 326 IPR000225 GO:0005515
Lele36g0473 460 Gene3D - 158 457 IPR011989 -
Lele36g0473 460 SMART arm_5 368 408 IPR000225 GO:0005515
Lele36g0473 460 SMART arm_5 286 326 IPR000225 GO:0005515
Lele36g0473 460 SMART arm_5 410 450 IPR000225 GO:0005515
Lele36g0473 460 SMART arm_5 204 244 IPR000225 GO:0005515
Lele36g0473 460 SMART arm_5 245 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0473 Lele-ChrLele36 2958668 2960598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0473 159 453 U-box Gene Family AT2G23140 48.814 3.25e-80 259