Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0428 ATGGAGGAGACTTCTCAAGGTCAAGGGATGGCTTTTGTGGGAGAGAACAGTAGTGGTGGGGGTGGTCTAGTATGTCCTCGAATGATGATGAATATGCCTATAGTGTCGTCTCATCATCATCATCATCATCAAAGTGGATATCATCATCCATTAATAAATCCTAAGGCTAATACACAACACACTAATTTAAACACTAGTAGTAGTAATACTCTTTTCCTTCCCACACCTTGCACTATTAACAGTACCTCTTCCTCTTCCTCCTCCTTTATTATGCTTCAAAACAGCAGCAACAACACTGCTGGGTTAAGCTTTGGCTGTTGTTTCATGGACATCGTCGTCAACAACAACATTGACAACAACAACAACAATGATGGTGGTTCATCTTCTTGTTCTTCGGTGAAGGCCAAGATCATGGCTCATCCTCACTACCTTCGTCTCCTCGCTGCTTACGTCAATTGTCAAAAGGTGGGCGCACCGCCGGAAACGGTGGCGAGGCTAGATGAAGCATATTCGGCGGCGGTGGCGGCCATGGGCGACAACGGAGGTGGGTCAGGCTGCACCGGCGAAGATCCGGCGCTGGATCAGTTCATGGAGGCATACTGTGAGATGTTGACAAAGTATGAGCAAGAGCTTTCCAAACCCTTCAACGAAGCTATGTTCTTCCTTCAGAACATCGAGCGTCAATTCAAAGCTCTCACCGTCGATTCTCCGATCAACTTTGCTTGTAATGAGAATACTGATAGGACAGAATCATCTGAAGATGAATTGGATCTTCAAAACAGCGGAAGCATGATCGATCTGCAGGCGGAGGATAAGGATCTGAAGGATCAGCTTCTCAGAAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAGGGGAAGCTGCCTAAAGAAGCAAGGCGACAATTACTTGATTGGTGGAACGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGCTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAGAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAATTCGTGGTGGTTGATCCAATGCATCCTCATCACTACTTCACGGACAACATTCTTGGAACTCCATATCCCATGGATTTCTCTCATACTATGCTCTGA 1179 0.4572 MEETSQGQGMAFVGENSSGGGGLVCPRMMMNMPIVSSHHHHHHQSGYHHPLINPKANTQHTNLNTSSSNTLFLPTPCTINSTSSSSSSFIMLQNSSNNTAGLSFGCCFMDIVVNNNIDNNNNNDGGSSSCSSVKAKIMAHPHYLRLLAAYVNCQKVGAPPETVARLDEAYSAAVAAMGDNGGGSGCTGEDPALDQFMEAYCEMLTKYEQELSKPFNEAMFFLQNIERQFKALTVDSPINFACNENTDRTESSEDELDLQNSGSMIDLQAEDKDLKDQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARRQLLDWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPMHPHHYFTDNILGTPYPMDFSHTML 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0428 392 Gene3D - 291 362 - -
Lele36g0428 392 MobiDBLite consensus disorder prediction 51 67 - -
Lele36g0428 392 ProSitePatterns 'Homeobox' domain signature. 331 354 IPR017970 GO:0000981|GO:0006355
Lele36g0428 392 ProSiteProfiles 'Homeobox' domain profile. 293 356 IPR001356 GO:0003677
Lele36g0428 392 SMART KNOX1_2 131 175 IPR005540 GO:0003677|GO:0005634
Lele36g0428 392 FunFam Homeobox protein knotted-1-like 2 298 360 - -
Lele36g0428 392 SMART KNOX2_2 183 234 IPR005541 GO:0003677|GO:0005634
Lele36g0428 392 ProSiteProfiles ELK domain profile. 273 293 IPR005539 GO:0003677
Lele36g0428 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 362 - -
Lele36g0428 392 Pfam Homeobox KN domain 313 352 IPR008422 GO:0003677|GO:0006355
Lele36g0428 392 SMART ELK_2 273 294 IPR005539 GO:0003677
Lele36g0428 392 Pfam ELK domain 273 294 IPR005539 GO:0003677
Lele36g0428 392 Pfam KNOX1 domain 133 170 IPR005540 GO:0003677|GO:0005634
Lele36g0428 392 SMART HOX_1 295 360 IPR001356 GO:0003677
Lele36g0428 392 Pfam KNOX2 domain 187 233 IPR005541 GO:0003677|GO:0005634
Lele36g0428 392 CDD homeodomain 305 357 IPR001356 GO:0003677
Lele36g0428 392 SUPERFAMILY Homeodomain-like 295 371 IPR009057 -
Lele36g0428 392 MobiDBLite consensus disorder prediction 37 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0428 Lele-ChrLele36 2639744 2644776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0428 117 392 Homeobox Transcription Factor Family AT1G62360 71.429 7.90e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele36g0428 KNOX2 4.7e-21 No_clan