LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele36g0417	ATGGCCACCTTCACACCACTATGCTTCTTCCTTTCAGCAATATCTTTCCTTCCACTTATAGCTTCAAGTTCATCATATGCCTACACTACTCCCAAAACTCCTCTGAACCTCATCCTCAACACCATAGACTCTTGCTGGAGATTCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCCGATTGTGCTGTTGGGTTTGGAAAACATGCCATTGGAGGAAAGCATGGAGCTATATATGAGGTCACCGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGAACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGTTAATATTCGCCGAGGACATGGTTATTAGACTCAACAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAAGTAGAGATTGCTTATGGACCTTGCATTACCATTCAAGGCGTTAATCACGTCATTATACATGGGATTAGCATCCACGATTGTAAACCAGGAAAAGCTGAGCTGGTTAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGCTCAGATGGAGACGCCATTAGCATATTTGGTTCCTCAAATGTTTGGGTTGACCATTGCTTCCTTGCTCGGTGTGCCGACGGTCTCATTGATATTATTCACGCTTCAACTTCCATCACCATTTCTAACAACTACTTCAAACAACACGACAAAGTGATGCTGTTAGGACACAGCGATAAATACCAAGCAGATAAGATAATGAAAGTGACAATAGCTTTCAACCATTTTGCTAACGGCCTCTATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCGCATGTGGTCAACAACAGATACGATGGTTGGAAGATGTATGCAATTGGGGGCAGTGCTGAGCCCACCATTCTGAGCGAAGGGAACTTCTATATAGCTCCAAGTAACCCCAGTGGGAAACAGGTGACCAAGAGGATAGTGAAGAAAGAGTGGAAGAATTGGAAATGGAGGACTTATAAGGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTGCTCAGTCTTTTGTTGCTGCGTCAGCATCCTTGGTGCCTGCATTAACCCTTCATGCTGGTCCTCTCACTTGTATTGGTGGGAAAGCTTGTTAA	1161	0.4462	MATFTPLCFFLSAISFLPLIASSSSYAYTTPKTPLNLILNTIDSCWRFNSNWASNRQALADCAVGFGKHAIGGKHGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWLIFAEDMVIRLNNELIVNSYKTIDGRGAKVEIAYGPCITIQGVNHVIIHGISIHDCKPGKAELVRSSSDHVGHRLGSDGDAISIFGSSNVWVDHCFLARCADGLIDIIHASTSITISNNYFKQHDKVMLLGHSDKYQADKIMKVTIAFNHFANGLYERMPRVRFGYAHVVNNRYDGWKMYAIGGSAEPTILSEGNFYIAPSNPSGKQVTKRIVKKEWKNWKWRTYKDAFVNGAYFVPSGYGSCAPYYSSAQSFVAASASLVPALTLHAGPLTCIGGKAC	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele36g0417	386	Gene3D	-	39	379	IPR012334	-
	Lele36g0417	386	SMART	amb_all	113	310	IPR002022	-
	Lele36g0417	386	Pfam	Pectate lyase	122	304	IPR002022	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	265	284	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	327	351	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	357	380	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	121	137	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	62	79	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	185	206	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	287	306	IPR018082	-
	Lele36g0417	386	PRINTS	Pollen allergen Amb family signature	85	110	IPR018082	-
	Lele36g0417	386	SUPERFAMILY	Pectin lyase-like	40	377	IPR011050	-
	Lele36g0417	386	PANTHER	PECTATE LYASE 18-RELATED	36	383	IPR045032	GO:0030570

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele36g0417	Lele-ChrLele36	2569368	2570880	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele36g0417	9	386	Polysaccharide Lyase	AT1G11920	68.571	0.0	540