Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0393 ATGATGCAGCCTGGTCCTGGCATGGGTCCCCCAACCATGGGCCAACAGCCTCCCCAGCAGTACCAGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGGGCCGCCGATGTGGGCACCCTCGGTTCAACCACCGCCACAGTCAGTCGGTCCACCGCCGACGACTCAAGCCGCCCAGCCTGCCAGCGCTGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAATTCTGGATGGATGAGAACTATTTGTACTCTTGTTTTGCTCATACAGGCGAGGTGGCCTCGGTTAAAGTTATTCGAAACAAGCAAACTAATCAGTCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGTGCAGCTGCTGAGAGAATACTTCAAGCATTTAATGGAACCATTATGCCAAATGGTGGCCAAACCTTCAGATTGAACTGGGCAACTTTTGGTTCTGGTGAGAAGCGGCACGATGATACTCCAGATTACACAATATTCGTTGGAGATTTAGCTGCAGAGGTTACAGATTACGTACTGCAGGAGACGTTTCGGGCAAGGTATACCTCAGTTAAAGGTGCAAAAGTTGTGATCGATAGACTCACTGGGAGGACAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGAAACTGAACAGATGCGAGCTATGACTGAGATGCAAGGTGTTGTGTGTTCAACGAGACCCATGCGGATTGGACCAGCAACTAACAAAAACCCTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCTGGGGGCACAGAACGAGAATGATCCAAATAATTCAACTATTTTTGTTGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCATGTTTTTGGCCAATATGGTGAGTTAGTACACGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATTTGCCGACAGGAGCTGCGCTGAAGAGGCCCTGAGGGTGTTAAATGGAACACCGTTGGGTGGACAGAATGTTCGTCTCTCTTGGGGCCGGAGTCCTTCAAACAAGCAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGTGCTGGGTATTACGGATATGCTCAGGGGTATGAGAACTATGGATATGCTCCAGCTGCTGCACAGGATCCCAACATTTATGGAAGCTATCCTGGCTACACCAATTACCAACCACAACAGCAACAGCAGCATAACGGTTATACTTGA 1212 0.4876 MMQPGPGMGPPTMGQQPPQQYQQQQHPYMMMPPQAQGPPMWAPSVQPPPQSVGPPPTTQAAQPASADEVRTLWIGDLQFWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQAFNGTIMPNGGQTFRLNWATFGSGEKRHDDTPDYTIFVGDLAAEVTDYVLQETFRARYTSVKGAKVVIDRLTGRTKGYGFVRFGDETEQMRAMTEMQGVVCSTRPMRIGPATNKNPGTQPKASYQNPLGAQNENDPNNSTIFVGNLDPNVTDDHLRHVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTPLGGQNVRLSWGRSPSNKQTQADPNQWNGGAGYYGYAQGYENYGYAPAAAQDPNIYGSYPGYTNYQPQQQQQHNGYT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0393 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 344 - -
Lele36g0393 403 MobiDBLite consensus disorder prediction 238 267 - -
Lele36g0393 403 SUPERFAMILY RNA-binding domain, RBD 253 365 IPR035979 GO:0003676
Lele36g0393 403 Gene3D - 162 238 IPR012677 -
Lele36g0393 403 MobiDBLite consensus disorder prediction 1 65 - -
Lele36g0393 403 MobiDBLite consensus disorder prediction 32 56 - -
Lele36g0393 403 CDD RRM3_NGR1_NAM8_like 267 338 - -
Lele36g0393 403 Gene3D - 10 157 IPR012677 -
Lele36g0393 403 SMART rrm1_1 164 238 IPR000504 GO:0003723
Lele36g0393 403 SMART rrm1_1 269 336 IPR000504 GO:0003723
Lele36g0393 403 SMART rrm1_1 71 146 IPR000504 GO:0003723
Lele36g0393 403 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Lele36g0393 403 FunFam Polyadenylate-binding protein RBP45C 247 373 - -
Lele36g0393 403 Gene3D - 244 349 IPR012677 -
Lele36g0393 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Lele36g0393 403 SUPERFAMILY RNA-binding domain, RBD 158 255 IPR035979 GO:0003676
Lele36g0393 403 SUPERFAMILY RNA-binding domain, RBD 30 152 IPR035979 GO:0003676
Lele36g0393 403 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Lele36g0393 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Lele36g0393 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Lele36g0393 403 MobiDBLite consensus disorder prediction 14 30 - -
Lele36g0393 403 CDD RRM1_SECp43_like 71 151 - -
Lele36g0393 403 CDD RRM2_SECp43_like 162 241 - -
Lele36g0393 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Lele36g0393 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Lele36g0393 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0393 Lele-ChrLele36 2369274 2372746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0393 267 348 Eukaryotic Initiation Factors Gene Family AT4G34110 35.955 6.77e-08 52.8