Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele36g0393 | ATGATGCAGCCTGGTCCTGGCATGGGTCCCCCAACCATGGGCCAACAGCCTCCCCAGCAGTACCAGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGGGCCGCCGATGTGGGCACCCTCGGTTCAACCACCGCCACAGTCAGTCGGTCCACCGCCGACGACTCAAGCCGCCCAGCCTGCCAGCGCTGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAATTCTGGATGGATGAGAACTATTTGTACTCTTGTTTTGCTCATACAGGCGAGGTGGCCTCGGTTAAAGTTATTCGAAACAAGCAAACTAATCAGTCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGTGCAGCTGCTGAGAGAATACTTCAAGCATTTAATGGAACCATTATGCCAAATGGTGGCCAAACCTTCAGATTGAACTGGGCAACTTTTGGTTCTGGTGAGAAGCGGCACGATGATACTCCAGATTACACAATATTCGTTGGAGATTTAGCTGCAGAGGTTACAGATTACGTACTGCAGGAGACGTTTCGGGCAAGGTATACCTCAGTTAAAGGTGCAAAAGTTGTGATCGATAGACTCACTGGGAGGACAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGAAACTGAACAGATGCGAGCTATGACTGAGATGCAAGGTGTTGTGTGTTCAACGAGACCCATGCGGATTGGACCAGCAACTAACAAAAACCCTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCTGGGGGCACAGAACGAGAATGATCCAAATAATTCAACTATTTTTGTTGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCATGTTTTTGGCCAATATGGTGAGTTAGTACACGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATTTGCCGACAGGAGCTGCGCTGAAGAGGCCCTGAGGGTGTTAAATGGAACACCGTTGGGTGGACAGAATGTTCGTCTCTCTTGGGGCCGGAGTCCTTCAAACAAGCAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGTGCTGGGTATTACGGATATGCTCAGGGGTATGAGAACTATGGATATGCTCCAGCTGCTGCACAGGATCCCAACATTTATGGAAGCTATCCTGGCTACACCAATTACCAACCACAACAGCAACAGCAGCATAACGGTTATACTTGA | 1212 | 0.4876 | MMQPGPGMGPPTMGQQPPQQYQQQQHPYMMMPPQAQGPPMWAPSVQPPPQSVGPPPTTQAAQPASADEVRTLWIGDLQFWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQAFNGTIMPNGGQTFRLNWATFGSGEKRHDDTPDYTIFVGDLAAEVTDYVLQETFRARYTSVKGAKVVIDRLTGRTKGYGFVRFGDETEQMRAMTEMQGVVCSTRPMRIGPATNKNPGTQPKASYQNPLGAQNENDPNNSTIFVGNLDPNVTDDHLRHVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTPLGGQNVRLSWGRSPSNKQTQADPNQWNGGAGYYGYAQGYENYGYAPAAAQDPNIYGSYPGYTNYQPQQQQQHNGYT | 403 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele36g0393 | 403 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 61 | 344 | - | - | |
Lele36g0393 | 403 | MobiDBLite | consensus disorder prediction | 238 | 267 | - | - | |
Lele36g0393 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 253 | 365 | IPR035979 | GO:0003676 | |
Lele36g0393 | 403 | Gene3D | - | 162 | 238 | IPR012677 | - | |
Lele36g0393 | 403 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Lele36g0393 | 403 | MobiDBLite | consensus disorder prediction | 32 | 56 | - | - | |
Lele36g0393 | 403 | CDD | RRM3_NGR1_NAM8_like | 267 | 338 | - | - | |
Lele36g0393 | 403 | Gene3D | - | 10 | 157 | IPR012677 | - | |
Lele36g0393 | 403 | SMART | rrm1_1 | 164 | 238 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | SMART | rrm1_1 | 269 | 336 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | SMART | rrm1_1 | 71 | 146 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | FunFam | Polyadenylate-binding protein RBP45 | 10 | 154 | - | - | |
Lele36g0393 | 403 | FunFam | Polyadenylate-binding protein RBP45C | 247 | 373 | - | - | |
Lele36g0393 | 403 | Gene3D | - | 244 | 349 | IPR012677 | - | |
Lele36g0393 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 70 | 150 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 158 | 255 | IPR035979 | GO:0003676 | |
Lele36g0393 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 152 | IPR035979 | GO:0003676 | |
Lele36g0393 | 403 | FunFam | Polyadenylate-binding protein RBP45C | 155 | 246 | - | - | |
Lele36g0393 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 163 | 242 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 268 | 340 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
Lele36g0393 | 403 | CDD | RRM1_SECp43_like | 71 | 151 | - | - | |
Lele36g0393 | 403 | CDD | RRM2_SECp43_like | 162 | 241 | - | - | |
Lele36g0393 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 270 | 333 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 72 | 137 | IPR000504 | GO:0003723 | |
Lele36g0393 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 165 | 229 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele36g0393 | Lele-ChrLele36 | 2369274 | 2372746 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele36g0393 | 267 | 348 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.955 | 6.77e-08 | 52.8 |