Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0376 ATGTTTCAACAGCCAAACATAATTGATTCTGATATGCTGGATATGTCCCACAAGATGTCGTCCGACAGTGATCTAATGGGAAGGAAGACCAATGTTGTCGACGATGATTACGAGACCAAATCGGTGACTGAAACAACCATGGAAGCTCCTTCCGGTGACGACCAAGACCCCGCCGACCAACGTCCCAAAAAGAAGCGCTACCACCGCCACACACAGCACCAAATACAAGAGTTGGAAGCCTTCTTCAAGGAGTGTCCCCACCCAGATGACAAACAAAGGAAAGAGCTGAGCCGTGAGCTGGGATTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAGCATGAACGGCATGACAATTCTATATTGAAGTCTGAGAATGAAAAGCTTCGTGCTGAGAACAATAGGTACAAGGAAGCCCTAAGCAACGCTTCATGCCCCAACTGCGGAGGCCCTGCCGCTCTTGGTGAAATGTCCTTTGACGAGCAGCATCTCAGGATTGAGAATGCTCGTTTAAGAGAAGAGATAGACAGGATATCAGGAATTGCAGCCAAATACGTTGGAAAGCCAGTGACAACGTTTTCACACCTTTTATCTCATCATCATGTTCCTTCACGCTCGCTGGAAGATCTTGGAGTTGGTAGTAACTTTGTGTCACAGTCAGGGACGGTAGGGGAAATGTACAGTGTGAGTAACAGTGATCTTATTGGGTCACTACCAGTGCCTTCTGAAGCTGACAAGCCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCACCAGATTGGCTCAGGCTGGAGAACCCTTGTGGGTTATCTCTAGTGACCACGAAGTTCTTAATGAAGATGAATACTTAAGGACTTTTCCTCGGGGCATAGGTCCTAAACCCTTGGGATTAAGATCTGAAGCTTCAAGGGAATCCGCCGTCGTTATCATGAACCATAGTAAACTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAATGGTGTTTTGCGGCATCGTTTCAAGAGCTATGACGCTTGAAGTCCTGTCTACTGGAGTGGCTGGAAACTATAACGGAGCGTTGCAAGTGATGTCTGCTGAGTTCCAAGTGCCTTCACCTCTTGTTCCTACAAGAGAGAACTATTTCGTTAGGTACTGTAAACAGCATCCAGATGGGACTTGGGCAGTGGTCGATGTTTCCTTAGACAACCTACGACCAAGTGGTTTATCTAAAAGCCGAAGAAGGCCTTCTGGCTGTCTCATCCAAGAATTGCCAAATGGATACTCTAAGGTCACATTTCACACTACTGTGTGTATATATATTATCTCCCCCATGTTGCTGATAGATATAGAGTTTAAGAACTGTTGTCTTACTTGTTTTCTTCTTCAATATATGAATATGAACGCATCTCCCAGGGTTTTCAATTTCCTCCGTGATGAAAACTCCAGAAGTGAGTGGGATATTTTATCCAATGGAGGTCTAGTCCAAGAAATGGCTCACATAGCAAATGGTCGCGATCCCGGCAATTTTGTCTCTCTACTTCGCGTCAATAGCGCAAATTCAAGCCAAAGCGACATGGTGATACTTCAGGAGAGCTGCACTGACGCAACGGGTTCGTACGTGATATATGCTCCTGTGGATATTGTGGCCATGAACACAGTTCTTGGAGGAGGAGATCCTGACTATGTTGCTCTCTTGCCTTCTGGTTTCGCCATTCTTCCTGATGGCTCCTCTCTGAGCAACAACAATGGAGGAGGGAATATTCTTGATGTTGGATCAGGAGGTTCTCTTCTCACTGTGGCGTTTCAGATCTTAGTTGATTCAGTGCCAACAGCTAAACTCTCTCTGGGCTCAGTCGCCACTGTTAACAGTTTGATTAAGTGCACTGTCGAGAGGATCAGAGCTGCCGTCATCTAA 1929 0.4609 MFQQPNIIDSDMLDMSHKMSSDSDLMGRKTNVVDDDYETKSVTETTMEAPSGDDQDPADQRPKKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHDNSILKSENEKLRAENNRYKEALSNASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTTFSHLLSHHHVPSRSLEDLGVGSNFVSQSGTVGEMYSVSNSDLIGSLPVPSEADKPMIVELAVAAMEELTRLAQAGEPLWVISSDHEVLNEDEYLRTFPRGIGPKPLGLRSEASRESAVVIMNHSKLVEILMDVNQWSMVFCGIVSRAMTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHPDGTWAVVDVSLDNLRPSGLSKSRRRPSGCLIQELPNGYSKVTFHTTVCIYIISPMLLIDIEFKNCCLTCFLLQYMNMNASPRVFNFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNFVSLLRVNSANSSQSDMVILQESCTDATGSYVIYAPVDIVAMNTVLGGGDPDYVALLPSGFAILPDGSSLSNNNGGGNILDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0376 642 ProSiteProfiles START domain profile. 250 437 IPR002913 GO:0008289
Lele36g0376 642 Pfam START domain 260 436 IPR002913 GO:0008289
Lele36g0376 642 CDD START_ArGLABRA2_like 254 436 - -
Lele36g0376 642 SUPERFAMILY Bet v1-like 252 442 - -
Lele36g0376 642 SMART START_1 259 477 IPR002913 GO:0008289
Lele36g0376 642 FunFam Homeobox-leucine zipper protein HDG1 51 137 - -
Lele36g0376 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 437 IPR042160 -
Lele36g0376 642 MobiDBLite consensus disorder prediction 15 42 - -
Lele36g0376 642 MobiDBLite consensus disorder prediction 1 71 - -
Lele36g0376 642 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Lele36g0376 642 Gene3D - 50 137 - -
Lele36g0376 642 Coils Coil 120 150 - -
Lele36g0376 642 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lele36g0376 642 SUPERFAMILY Bet v1-like 461 638 - -
Lele36g0376 642 CDD homeodomain 64 122 IPR001356 GO:0003677
Lele36g0376 642 SUPERFAMILY Homeodomain-like 47 121 IPR009057 -
Lele36g0376 642 SMART HOX_1 62 125 IPR001356 GO:0003677
Lele36g0376 642 Pfam Homeodomain 64 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0376 Lele-ChrLele36 2244910 2248529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0376 473 641 Homeobox Transcription Factor Family AT4G04890 80.791 6.13e-82 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele36g0376 START 2.7e-40 CL0209