Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0373 ATGATTAAGGGGAATCGGGACTTAAAGTCTGCATTTGATGCCTTGAATGAAATTAGTACTAGGAAATTGACCCCTGATTTTGTTACTTACACTGAAATGTTCTTTAGGTCTTTTAATGAAAACATTAGTTTGCAGGATGTTACTTATGGGTCTCTGCTAAGAGCACTATCCAGCGAGAGGAGAGTCAAGGAAGCAATTTCTGCATATAATATAACTTCTCAGAGAGGTCTTTCTTTGGACTATGGCAATTATCAAGCATTTGCTAATTTTCTCTGTGAAGATGATTATCAGTATGCAGAAGTGGAAGGTTTTCAACGGTTGAAAAACATTGTAAGAAGAGGATTTGATCCTTCTTCATCAAACTTTTCCAAACTCCTTGTGGCGAGGAAGATTGAAGAAGCTGTTAAGGTGTTTGACTACACAAGAAGACATGATTTAATACTTAGCAGTGAGAGTTTTGTGATAATGATACGTACTGAGCTTTGTAAAGTGAAGGAACTCAGAAAAGCCATGAGACTACATGATGAAATGTTGAAGATGGGGCTTAAACCAGATAAACCAACATATAAACGGGCAATTCACAAATTCATAAGGAAGGTGCCAATGTTTTTGGTGGATCGAAATGAGAGATCCAAGTTTACAGTATTCTTTAGGGGACCAGGCATGCAGCTAGGGCTTGAAGGTTTCTGTGTGGGGTTCCTCTATACAATTGTGGGTGTGTTGTTGGGTGAGGGGGTGGTGTTCTTGAGCAATTGGAAGTCTGATTCCGATTTCTCAATTTCTTGCAGCTTAGGAAAGTTGAAGGTTCTGACATCCTCCGAATACACAACTTGGCTCTGGATTTTCATTCCTATACTTTTGGAAATAGCAAACATATGCAATGCCATTTTCAATCCTTTATGGGTTCTGCTTTTCAGGAAAAGAATTAAGAAGAAAATGGAGGAAGCGGGTGAAGTGGTGGGAAGGGCATTTGTGGATCATTACTACAACTTATTTGATAATGATAGAGCTTCACTATCTTCTCTGTATAGGGACAACTCCATGTTGACCTTCGAGGGTCAGAAATTTGCTGGCGCCACTGATATCTCTTCCAAGCTCACCCAGCTGCCCTTGGATCAATGCCGCCACGTCATCAGCACTGTTGACACTCAGCCCTCGTCCCCAGCCGGAGGTGGCATTGTCGTCTTTGTCAGCGGCAGCCTCCAGTTGGCCGGAGAGGAGCATCATCTCAGGTTTAGCCAGATGTTTCAGTGGATTCCAACAGCAGAAGGAAGCTTCTATGTGCAGAATGACATATTTCGTCTCTGCTACGTACCCACATCAGGCAAGCAAAACACATTAGAATCATCGTCCTCTTATACTATGGCTTCTTCTTCCCACCAATCTCTCCTTGACAAACCCAAAACATCCATTTCCAGAACCATCTTGTTTGCTCTCTCTCTAGCTGCTCTAATCTGCTCTGCTCTTGTTGCTTCTCATCTCTTCATACCCTCCTCCTCCTTCTTCAACCTCTCTCTCCCCCATCATCATCTCTGTGATCATGCCCTTCACAAATCATCTTGCCTTGCCCACCTCTCTGAATTAACTCAAGCTCCAACCTTTGTTACCACCAACGACCAAAACTCCAACTTGCTCCAATCTTTCCTCTTGAAAACCACCTCACAAATCCAGAAAACTGTGTACTCAACCAAAGCCGTCAAATACAGAATCAACGATCCAAAACAGCAGCAAGCTCTGCTTGTGTGTGAGCAACTTCTGGATTCGTCCCTTGATAGAGTTTGGGACTCTATCGTGGCTCTCACAGAAAAGACCACCAAATCCTACCAAGATGCTCACACGTGGCTGAGCACTGTCCTCACTAACCACATCACTTGTTTGGATGAGTTAGAAGGATCACCTCGAGCCCTTATAGAATCTGAGCTCAATGACTTGGTCTCCAGAGCCAGAACAACCCTAGCCATGCTTGTTCATGTGAAGACCTTTGATATCGACGCGATCGATGAGCCACTTAATGGGGAGTTTCCCTCATGGGTGACGAGTAAGGATAGGAAGCTTCTGGAAGCTTCTGCTAATGACATAAAGGCCAACGTGGTGGTGGCTAAGGATGGAAGTGGCAGGTTTAAGACTGTGAAGGAGGCTGTGGCTTCGGCACCTGATAATGGTAAGACGAGGTATGTGATCTATGTGAAGAAAGGAGTTTATAAAGAAAACGTTGAGATTGTATCGAAGAAGAAGAATGTGATGCTGGTCGGTGATGGTATGGATGCGACGATCATCACTGGAAGCCTGAATGCCGTCGATGGAACGCCCACCTTCAGAACCGCCACCGTCGCTGCGGTTGGGGATGGATTCATTGCCCAAGACATATGGTTTCAGAACACTGCAGGCCCTCAGAAGCATCAGGCGGTGGCTCTCCGCGTCGGCGCCGATCTCTCCGTCATCAACCGCTGCCGTGTGGACGCCTTCCAAGACAGTCTATACACCCACACCAACAGGCAATTCTACCGTGACGCCTTCATCACAGGCACCGTCGACTTCATCTTTGGCAATGCCGCCGTCGTGTTCCAAAAGTGCAACCTTGTGGCCCGAAAGCCCATGAATAACCAGAACAACATGGTCACAGCTCAAGGACGCGAAGACCCAAACCAGAACACAGGGACTTCAATCCAGCAATGTAACCTAACACCAAGCTCCGATCTCAAGCCCGTCGTGGGTTCAGTCAAAACCTTCTTGGGCCGTCCATGGAAGGAATTCTCTCGAACTGTGGTGATGCAGTCAACCCTGGATAGCCATATTGATCCAGCAGGATGGGCTCCATGGGACAACAAGGAATCGACACTGAAGAATTTGTATTATGGAGAGTACCAGAACAAAGGACCTGGTGCTGGTACTGCCAAGAGAGTGAAATGGGCCGGTTATCATGTGATTACAAGTGCTGCTGAGGCAAGCAAATTCACGGTGGCTCAGCTGATTCAAGGTGCCACTTGGCTCAAGAACACTGGGGTCGCCTTCATTGAAGGGCTGTAG 3027 0.4605 MIKGNRDLKSAFDALNEISTRKLTPDFVTYTEMFFRSFNENISLQDVTYGSLLRALSSERRVKEAISAYNITSQRGLSLDYGNYQAFANFLCEDDYQYAEVEGFQRLKNIVRRGFDPSSSNFSKLLVARKIEEAVKVFDYTRRHDLILSSESFVIMIRTELCKVKELRKAMRLHDEMLKMGLKPDKPTYKRAIHKFIRKVPMFLVDRNERSKFTVFFRGPGMQLGLEGFCVGFLYTIVGVLLGEGVVFLSNWKSDSDFSISCSLGKLKVLTSSEYTTWLWIFIPILLEIANICNAIFNPLWVLLFRKRIKKKMEEAGEVVGRAFVDHYYNLFDNDRASLSSLYRDNSMLTFEGQKFAGATDISSKLTQLPLDQCRHVISTVDTQPSSPAGGGIVVFVSGSLQLAGEEHHLRFSQMFQWIPTAEGSFYVQNDIFRLCYVPTSGKQNTLESSSSYTMASSSHQSLLDKPKTSISRTILFALSLAALICSALVASHLFIPSSSFFNLSLPHHHLCDHALHKSSCLAHLSELTQAPTFVTTNDQNSNLLQSFLLKTTSQIQKTVYSTKAVKYRINDPKQQQALLVCEQLLDSSLDRVWDSIVALTEKTTKSYQDAHTWLSTVLTNHITCLDELEGSPRALIESELNDLVSRARTTLAMLVHVKTFDIDAIDEPLNGEFPSWVTSKDRKLLEASANDIKANVVVAKDGSGRFKTVKEAVASAPDNGKTRYVIYVKKGVYKENVEIVSKKKNVMLVGDGMDATIITGSLNAVDGTPTFRTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADLSVINRCRVDAFQDSLYTHTNRQFYRDAFITGTVDFIFGNAAVVFQKCNLVARKPMNNQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSVKTFLGRPWKEFSRTVVMQSTLDSHIDPAGWAPWDNKESTLKNLYYGEYQNKGPGAGTAKRVKWAGYHVITSAAEASKFTVAQLIQGATWLKNTGVAFIEGL 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0373 1008 ProSitePatterns Pectinesterase signature 1. 721 740 IPR018040 -
Lele36g0373 1008 CDD PMEI-like_4 519 656 - -
Lele36g0373 1008 Pfam PPR repeat 47 70 IPR002885 -
Lele36g0373 1008 Pfam PPR repeat 161 182 IPR002885 -
Lele36g0373 1008 Gene3D Tetratricopeptide repeat domain 51 200 IPR011990 GO:0005515
Lele36g0373 1008 TIGRFAM PME_inhib: pectinesterase inhibitor domain 509 634 IPR006501 GO:0004857
Lele36g0373 1008 SUPERFAMILY Pectin lyase-like 694 1007 IPR011050 -
Lele36g0373 1008 ProSitePatterns Pectinesterase signature 2. 840 849 IPR033131 -
Lele36g0373 1008 Gene3D - 309 438 - -
Lele36g0373 1008 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 510 653 IPR035513 -
Lele36g0373 1008 Pfam Pectinesterase 696 993 IPR000070 GO:0030599|GO:0042545
Lele36g0373 1008 Pfam Nuclear transport factor 2 (NTF2) domain 320 435 IPR002075 -
Lele36g0373 1008 SMART PMEI_2 497 654 IPR006501 GO:0004857
Lele36g0373 1008 Gene3D Invertase/pectin methylesterase inhibitor family protein 509 658 IPR035513 -
Lele36g0373 1008 ProSiteProfiles Nuclear transport factor 2 domain profile. 320 435 IPR018222 -
Lele36g0373 1008 FunFam Pectinesterase 690 1008 - -
Lele36g0373 1008 Pfam Plant invertase/pectin methylesterase inhibitor 510 643 IPR006501 GO:0004857
Lele36g0373 1008 CDD NTF2 317 435 IPR018222 -
Lele36g0373 1008 SUPERFAMILY NTF2-like 319 435 IPR032710 -
Lele36g0373 1008 FunFam Nuclear transport factor 2 313 438 - -
Lele36g0373 1008 Gene3D - 690 1008 IPR012334 -
Lele36g0373 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 184 IPR002885 -
Lele36g0373 1008 PANTHER PECTINESTERASE 486 998 - -
Lele36g0373 1008 TIGRFAM PPR: pentatricopeptide repeat domain 161 185 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0373 Lele-ChrLele36 2218404 2227859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0373 454 1008 Carbohydrate Esterase AT1G11580 54.965 0.0 601