Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0367 ATGTGGCCAATCAGTTTGAACTTGGTTAATTTAGATGATCCTCGAAAAAACCCTAGCAAATCAAAACTCTTCAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAAGTCGAGAGTTCAGATACCATAGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAAAGGCTAATCTTTGCCGGAAAACAGCTTGAGGATGGCCGTACCCTGGCAGATTATAACATCCAGAAAGAGTCCACCCTCCACCTGGTGCTTCGTCTCCGTGGAGGAATGCAAATTTTTGTTAAGACACTGACAGGGAAGACCATTACCTTAGAGGTGGAAAGTTCTGACACTATCGATAACGTCAAGGCAAAGATCCAGGATAAAGAGGGAATCCCACCAGACCAACAAAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGAACCTTGGCTGACTACAATATTCAGAAGGAGTCCACTCTTCATCTTGTTCTGCGTCTTCGTGGTGGTATGCAGATTTTTGTGAAAACCCTTACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTGAAGGCTAAGATCCAAGATAAGGAAGGAATCCCCCCTGACCAGCAGAGGTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGGCTGATTATAATATTCAGAAAGAGTCCACACTCCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTGGAGGTTGAGAGTTCGGATACTATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCGGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTTCGTGGAGGATTCTAA 1221 0.4758 MWPISLNLVNLDDPRKNPSKSKLFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0367 406 Pfam Ubiquitin family 28 99 IPR000626 GO:0005515
Lele36g0367 406 Pfam Ubiquitin family 332 403 IPR000626 GO:0005515
Lele36g0367 406 Pfam Ubiquitin family 180 251 IPR000626 GO:0005515
Lele36g0367 406 Pfam Ubiquitin family 104 175 IPR000626 GO:0005515
Lele36g0367 406 Pfam Ubiquitin family 256 327 IPR000626 GO:0005515
Lele36g0367 406 FunFam Polyubiquitin 3 330 405 - -
Lele36g0367 406 ProSitePatterns Ubiquitin domain signature. 280 305 IPR019954 -
Lele36g0367 406 SUPERFAMILY Ubiquitin-like 329 405 IPR029071 -
Lele36g0367 406 FunFam Polyubiquitin 3 254 329 - -
Lele36g0367 406 PANTHER UBIQUITIN 178 255 - -
Lele36g0367 406 CDD Ubl_ubiquitin 330 405 - -
Lele36g0367 406 CDD Ubl_ubiquitin 178 253 - -
Lele36g0367 406 SUPERFAMILY Ubiquitin-like 101 177 IPR029071 -
Lele36g0367 406 FunFam Polyubiquitin 3 178 253 - -
Lele36g0367 406 SUPERFAMILY Ubiquitin-like 253 329 IPR029071 -
Lele36g0367 406 ProSitePatterns Ubiquitin domain signature. 52 77 IPR019954 -
Lele36g0367 406 CDD Ubl_ubiquitin 26 101 - -
Lele36g0367 406 FunFam Polyubiquitin 3 102 177 - -
Lele36g0367 406 ProSitePatterns Ubiquitin domain signature. 356 381 IPR019954 -
Lele36g0367 406 FunFam Polyubiquitin 3 26 101 - -
Lele36g0367 406 ProSitePatterns Ubiquitin domain signature. 204 229 IPR019954 -
Lele36g0367 406 PRINTS Ubiquitin signature 57 77 IPR019956 -
Lele36g0367 406 PRINTS Ubiquitin signature 36 56 IPR019956 -
Lele36g0367 406 PRINTS Ubiquitin signature 78 99 IPR019956 -
Lele36g0367 406 SUPERFAMILY Ubiquitin-like 25 101 IPR029071 -
Lele36g0367 406 SMART ubq_7 330 401 IPR000626 GO:0005515
Lele36g0367 406 SMART ubq_7 26 97 IPR000626 GO:0005515
Lele36g0367 406 SMART ubq_7 102 173 IPR000626 GO:0005515
Lele36g0367 406 SMART ubq_7 178 249 IPR000626 GO:0005515
Lele36g0367 406 SMART ubq_7 254 325 IPR000626 GO:0005515
Lele36g0367 406 ProSiteProfiles Ubiquitin domain profile. 102 177 IPR000626 GO:0005515
Lele36g0367 406 ProSiteProfiles Ubiquitin domain profile. 178 253 IPR000626 GO:0005515
Lele36g0367 406 CDD Ubl_ubiquitin 254 329 - -
Lele36g0367 406 ProSiteProfiles Ubiquitin domain profile. 254 329 IPR000626 GO:0005515
Lele36g0367 406 ProSitePatterns Ubiquitin domain signature. 128 153 IPR019954 -
Lele36g0367 406 ProSiteProfiles Ubiquitin domain profile. 330 405 IPR000626 GO:0005515
Lele36g0367 406 SUPERFAMILY Ubiquitin-like 177 253 IPR029071 -
Lele36g0367 406 CDD Ubl_ubiquitin 102 177 - -
Lele36g0367 406 Gene3D - 19 101 - -
Lele36g0367 406 Gene3D - 330 406 - -
Lele36g0367 406 Gene3D - 102 178 - -
Lele36g0367 406 Gene3D - 179 253 - -
Lele36g0367 406 Gene3D - 254 329 - -
Lele36g0367 406 ProSiteProfiles Ubiquitin domain profile. 26 101 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0367 Lele-ChrLele36 2190832 2194582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0367 330 406 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.65e-47 156