Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0342 ATGGATCTCATAACCAAGAAAACCACAAGCACAGGCCGCAAGAAGATCGAGGTAAAGGAGATAGAGAAGGATTCCAACAAACAAGTCACCTTCTCGAAACGACGCACCGGACTGTTCAAGAAAGCCAGCGAGCTCTGCGTCTTGTGCAATGCTCAGATCGCCATCATAGTGTTCTCGCCTGCCGACAAAGCCTTTTGCTTCGGCCAACCCAACGTTGAAGCCGTCCTCCGCCGCTACAAACCCGAAGGAACAGAAGATCATCACGACGAACAACCTATCAGGGCGCCGGCGAGCGAGCTCAGTCTGGTGTCTTACGAAGAACTTAACAGACAACATGAGGAAGCAGTGAAGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATAAAAAATGTGGCTAAGGTATGGAATAGAGGAAACTGGTGGGACGAACCGATTGATGAGATGGATTTGGATCAGTTAGAACAATATGTGATGGCCATGCATGAGTTAAGAAGAAAGGTAGCTGAGAAGGCTGATGAGTTAATGAGGGTTTCGATAATGCCGCCGTCGGCGCCGTCGTTTTATGGTGAAAGTTCATTTGGTGATCTTCTTAGCGGAGGTGGCGGCGGCGGCTACGGTGGTTTTGCTAACCAGTTCGGTGGCAGCGGTCTTGTTGCTTATCATGACAAGTTTGAATTTTGA 684 0.4898 MDLITKKTTSTGRKKIEVKEIEKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPNVEAVLRRYKPEGTEDHHDEQPIRAPASELSLVSYEELNRQHEEAVKALEMEKQQLEEIKNVAKVWNRGNWWDEPIDEMDLDQLEQYVMAMHELRRKVAEKADELMRVSIMPPSAPSFYGESSFGDLLSGGGGGGYGGFANQFGGSGLVAYHDKFEF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0342 227 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Lele36g0342 227 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Lele36g0342 227 Coils Coil 102 132 - -
Lele36g0342 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Lele36g0342 227 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Lele36g0342 227 Coils Coil 154 174 - -
Lele36g0342 227 CDD MADS_MEF2_like 12 80 IPR033896 GO:0000977|GO:0045944
Lele36g0342 227 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Lele36g0342 227 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Lele36g0342 227 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Lele36g0342 227 PANTHER MADS BOX PROTEIN 13 170 - -
Lele36g0342 227 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Lele36g0342 227 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0342 Lele-ChrLele36 2042615 2043298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0342 10 206 Type I MADS-box Gene Family AT5G60440 39.303 1.00e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele36g0342 SRF-TF 1.4e-23 No_clan