Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0341 ATGGCGATGCACAAAAAGTGTAGTTCAGCTCGTCAAAAGATTCCGATCGTGAAAATACCAAAGAGAAGTAATTTACAAGTTACATTTTCCAAGCGTCGTTCAGGACTGTTCAAGAAAGCCAGTGAGCTTTGCACGCTCTGTGGGGTAGAAATCGCCATGATCGTCTTCTCTCCAGCTAACAAAGCTTTCTCTTTTGGCCACCCAGGAGTTGAATCCATAATCTACCGTTACCTAGCTGCTCGAAAATATTCGCATCATGCAGACTCGTCGTCGTCGTCGTCATCAGCAATCACTAGTGTTCATCGGAATTCTAATGTTTGTAATCTGAATATGCAGTTAACACAGATTTTGAACCAGTTGGAGATGGAGAAGAAGCGAGGAGAAGAACTCGACAGAACGAGGAAAGCGAGGCAGAGAGAGTTCTGGTGGGAGAGTCCAATCGATGAGATTGATTCAGTTGATCAGTTACAGAAATTGAGGATTGCAATGGAGGAATGCACGAAGGATGTTTTAAGGCAAAAGAGTTATATTGCGTCTTGTTCATCATCGCAGATTGTTGTTGGGGAAGATTATCATTATGGATCGTTATTCGGACGTTACGCTGATGTCTTTGATAACAAATTATTAGTAGGTGGTGGTGCTGAGAATATTAATGTTGCTGCTAATTCGTCCGGTGTTATTCCTGATGATGCCTTTGATAACCTTATTCACCAAAACCACGACATAGGGATCTTTAAGTTTACTTCTCATCAGTTCTGA 759 0.419 MAMHKKCSSARQKIPIVKIPKRSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPANKAFSFGHPGVESIIYRYLAARKYSHHADSSSSSSSAITSVHRNSNVCNLNMQLTQILNQLEMEKKRGEELDRTRKARQREFWWESPIDEIDSVDQLQKLRIAMEECTKDVLRQKSYIASCSSSQIVVGEDYHYGSLFGRYADVFDNKLLVGGGAENINVAANSSGVIPDDAFDNLIHQNHDIGIFKFTSHQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0341 252 PANTHER MADS BOX PROTEIN 11 172 - -
Lele36g0341 252 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Lele36g0341 252 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 SUPERFAMILY SRF-like 11 86 IPR036879 GO:0003677|GO:0046983
Lele36g0341 252 Gene3D - 94 189 - -
Lele36g0341 252 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 Gene3D - 22 93 IPR036879 GO:0003677|GO:0046983
Lele36g0341 252 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lele36g0341 252 Coils Coil 110 130 - -
Lele36g0341 252 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0341 Lele-ChrLele36 2039017 2039775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0341 8 225 Type I MADS-box Gene Family AT2G24840 44.493 1.86e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele36g0341 SRF-TF 1.2e-23 No_clan