Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0340 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGACCAACGAGAGCAACTTGCAGGTAACTTTCTCGAAGCGTCGCACTGGGCTTTTCAAGAAAGCTAGTGAGCTTTGTACTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCCCCGGCGAGAAGGGCTTCTCCTTCGGACATCCCAGCGTCGACACCGTGGTGGATCGCTACCTCACGCGAGCCCCACCACCACAGGCCTCCGGCACCATGCAGCTCATCGAGGCTCACCGCAGCGCCAACGTTCGCGACCTCATCGTCCAGTTCACTCAAATCTCTGCCCAGCTCGACATCGAGAAGAAGCGCAATGATGAACTGAATCACATGCGAAAGGCCACACAAGGTCAGTGCTGGTGGGCAGCTCCGATTGATGAGATGTCAAGGTCAGAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTAAAGAGGAGTGTGACGAGGCAGGCGGATAGGATGGTGCTGATTCAGGGCGCGAGTAACTCATCGAATCAGTTTTTGGTCGGAGGTTCGTCGTCGAATGAGGTGGCTCCACCGCCACCTCCACTGCCTCATCAGGTGTTTCAGTCGCCGCCGTCGGTGGCGGTGGGTCAAAATCTTGCTGTGTTTGATGGCAATATTGTGCCATCACACTATGGATTTGGAGGACACCCACCACCACCAGGGTTTTACTGA 726 0.551 MSTSRRSKGRQKIEMKKMTNESNLQVTFSKRRTGLFKKASELCTLCDAEVALIVFSPGEKGFSFGHPSVDTVVDRYLTRAPPPQASGTMQLIEAHRSANVRDLIVQFTQISAQLDIEKKRNDELNHMRKATQGQCWWAAPIDEMSRSELEEFKAALEELKRSVTRQADRMVLIQGASNSSNQFLVGGSSSNEVAPPPPPLPHQVFQSPPSVAVGQNLAVFDGNIVPSHYGFGGHPPPPGFY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0340 241 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Lele36g0340 241 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Lele36g0340 241 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lele36g0340 241 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lele36g0340 241 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lele36g0340 241 Coils Coil 149 169 - -
Lele36g0340 241 Gene3D - 88 184 - -
Lele36g0340 241 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Lele36g0340 241 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lele36g0340 241 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Lele36g0340 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lele36g0340 241 PANTHER MADS BOX PROTEIN 10 166 - -
Lele36g0340 241 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0340 Lele-ChrLele36 2035000 2035821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0340 5 191 Type I MADS-box Gene Family AT5G60440 56.085 3.89e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele36g0340 SRF-TF 8.7e-24 No_clan