Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0315 ATGGCTTTAGAGGCTCTGAATTCTCCCACTACTTCCCCAGCTTCTTTCACCTTCAAGCATGAGGAAGAAGACGATGAGCTTGATCTTCATTGGGCTAAGGGCAAACGTTCCAAACGTCCTCGTTTCGACGCCAACAACCCTCCCTCTGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCAAAGCGGCCACAACAACTCCTCTTCCTCCGCCGCCGCCTCTCCGCCGCGTCCTTTGTCTTCATCGTATCCTCCTAATAATCCTGTGAAGCTGTCTCATAGGTGTACCGTCTGTAATAAAGTCTTCTCTTCTTACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGTAAGTCCTCCTCCGAATCCGCCGCCGCCGACAACACCGCCTCCACTTCCTCTGGTGCCGGCACGGGAAGGATGCACCAGTGTTCCATCTGTCACAAGGTCTTCCCTACCGGTCAGGCCTTGGGTGGACACAAGAGATGTCACTACGACGGCGGCAACGCGAACAACAGTAGCGCCGGCCCCGGCGTTTCCTCATCGGAGGGAGGTGGCGCGTCTACTGTAAGCCTCCGTGGGTTCGACTTAAACCTGCCGGCACCGCTGATGGACTTATCCCCGGCAGGATTTGGCTCCAGCTCCGACTCCGGGATGAAGAAGATCGGCGTAGAGCAAGAGGTGGAAAGTCCGTTACCGGTAGGAGCCGGTAATAAGAGGAGCCGTGTGCTTTTGACCGGCGAAGAAGACGATGTAAAGTCTTCGTCGTTAGGGAATTAA 783 0.5581 MALEALNSPTTSPASFTFKHEEEDDELDLHWAKGKRSKRPRFDANNPPSEEEYLALCLIMLAQSGHNNSSSSAAASPPRPLSSSYPPNNPVKLSHRCTVCNKVFSSYQALGGHKASHRKSSSESAAADNTASTSSGAGTGRMHQCSICHKVFPTGQALGGHKRCHYDGGNANNSSAGPGVSSSEGGGASTVSLRGFDLNLPAPLMDLSPAGFGSSSDSGMKKIGVEQEVESPLPVGAGNKRSRVLLTGEEDDVKSSSLGN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0315 260 MobiDBLite consensus disorder prediction 122 139 - -
Lele36g0315 260 Gene3D Classic Zinc Finger 93 165 - -
Lele36g0315 260 MobiDBLite consensus disorder prediction 17 46 - -
Lele36g0315 260 MobiDBLite consensus disorder prediction 209 260 - -
Lele36g0315 260 Pfam C2H2-type zinc finger 143 167 - -
Lele36g0315 260 Pfam C2H2-type zinc finger 95 119 - -
Lele36g0315 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Lele36g0315 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Lele36g0315 260 SUPERFAMILY beta-beta-alpha zinc fingers 95 165 IPR036236 -
Lele36g0315 260 MobiDBLite consensus disorder prediction 114 139 - -
Lele36g0315 260 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Lele36g0315 260 MobiDBLite consensus disorder prediction 1 47 - -
Lele36g0315 260 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 202 IPR044653 GO:0003700
Lele36g0315 260 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lele36g0315 260 SMART c2h2final6 95 117 IPR013087 -
Lele36g0315 260 SMART c2h2final6 143 165 IPR013087 -
Lele36g0315 260 MobiDBLite consensus disorder prediction 67 88 - -
Lele36g0315 260 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0315 Lele-ChrLele36 1865279 1866061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0315 1 234 C2H2 Transcription Factor Family AT1G27730 43.320 4.35e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele36g0315 zf-C2H2_6 1.1e-11 CL0361