LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele36g0291	ATGAATACAGATTCGGCAGCAGTGGAGGCGCAGCAGAGAAACGTGGATCGGATGGTCAAGGGACCATGGAGTCCCGAGGAGGATGAGTTGTTGCGCAAGCTCGTACAACGGTACGGCCCGCGGAATTGGTCCGCCATTAGCAAATCCATACCCGGCAGGTCCGGGAAGTCTTGTCGTCTGCGGTGGTGCAACCAGCTCTCGCCGGACGTGGAGCACCGGTCCTTCACACCGGAGGAAGACGAGATCATCATCAACGCCCACTCAAAGTTCGGCAACAAGTGGGCCACCATAGCGAAGCTTATGAACGGCCGTACGGACAACGCGATCAAAAACCATTGGAACTCGACCTTAAAGCGCAAGTACTCGTCCTTGATCACCGATGAAGGCGCCATAATCGATGGGCCTCCGGAAAAGAAATTAGCCATTGTGGAACGCGCTGTGCCGATACAGTCATTGCCGCCGGGCGGCCATTGTTACAGCCCAAGCAGTCCATCGGGATCTGATGTTAGTGACTCAAGTCTTCCCGGGGTTTCATCTTCGATAGCGATTCGTCCTGTAGCAAGAAACTGCGCAATCTTGTCTCCTTCCCAGCAGGTCGAATGGCGCCCTAGTCCAATCTTCAACTTAAACAAAGAGCCTTGCACTGATCTTAGTCTGTCCCCTCTGGGAGCCGAGTTGAAGGTGTCGCAGAAGATTCATAGTCCTGGTTCTAGGGCCGAGGTACCAATGCAGTCTGAGAAGTTGTCGTCAATGGCGACGTTTGGGCCTGATTTACTGATGGTGATGAAGGAAATGATAAGGGAGGAGGTGAGAAATTACATGGAGGGACATATATATGATAGATTGTGCTCTAATCCTGACGGTGTGAGTGCGGGAGTTTCAAAGACTGTACAGATGAGGACAGGGGAAATATCAGGGAAAGTTGGTAGGGTTTTAAGTTTGGAGCCATGA	951	0.5216	MNTDSAAVEAQQRNVDRMVKGPWSPEEDELLRKLVQRYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPDVEHRSFTPEEDEIIINAHSKFGNKWATIAKLMNGRTDNAIKNHWNSTLKRKYSSLITDEGAIIDGPPEKKLAIVERAVPIQSLPPGGHCYSPSSPSGSDVSDSSLPGVSSSIAIRPVARNCAILSPSQQVEWRPSPIFNLNKEPCTDLSLSPLGAELKVSQKIHSPGSRAEVPMQSEKLSSMATFGPDLLMVMKEMIREEVRNYMEGHIYDRLCSNPDGVSAGVSKTVQMRTGEISGKVGRVLSLEP	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele36g0291	316	Pfam	Myb-like DNA-binding domain	20	66	IPR001005	-
	Lele36g0291	316	Pfam	Myb-like DNA-binding domain	74	116	IPR001005	-
	Lele36g0291	316	ProSiteProfiles	Myb-like domain profile.	67	117	IPR001005	-
	Lele36g0291	316	SMART	sant	71	119	IPR001005	-
	Lele36g0291	316	SMART	sant	19	68	IPR001005	-
	Lele36g0291	316	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele36g0291	316	CDD	SANT	22	64	IPR001005	-
	Lele36g0291	316	Gene3D	-	19	71	-	-
	Lele36g0291	316	Gene3D	-	74	120	-	-
	Lele36g0291	316	MobiDBLite	consensus disorder prediction	156	173	-	-
	Lele36g0291	316	SUPERFAMILY	Homeodomain-like	17	113	IPR009057	-
	Lele36g0291	316	FunFam	Transcription factor MYB44	74	120	-	-
	Lele36g0291	316	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	70	IPR017930	-
	Lele36g0291	316	MobiDBLite	consensus disorder prediction	153	173	-	-
	Lele36g0291	316	FunFam	MYB transcription factor	20	71	-	-
	Lele36g0291	316	CDD	SANT	74	117	IPR001005	-
	Lele36g0291	316	ProSiteProfiles	Myb-like domain profile.	15	66	IPR001005	-
	Lele36g0291	316	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	121	IPR017930	-
	Lele36g0291	316	PANTHER	MYB PROTEIN-RELATED	20	196	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele36g0291	Lele-ChrLele36	1709525	1710595	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele36g0291	12	274	MYB Transcription Factor Family	AT4G37260	47.331	1.23e-69	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele36g0291		Myb_DNA-binding	3.7e-18	CL0123