Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0272 ATGGCTCAGGTTCAGCCTCAGAATGCAATTCTGGGGACTAATGGTGCTGCTGCGGCTGGTGGGAGCGGCCAGTTTGGGGCTTCGTCTCTTTATGTCGGAGATCTTGACCTGAATGTCACGGATTCGCAGCTATATGACCTGTTTAATCAAGTTGGTCAGGTCGTGTCTGTTAGGGTTTGTAGGGATTTGACTAGCCGGAGATCACTTGGATATGGTTATGTCAATTTCAGCAACGCACAGGATGCTGCCAGAGCAATGGATATGCTGAACTTCACTCCTCTGAATAACAAGCCCGTTCGTATCATGTATTCACATCGTGATCCAAGTATTCGCAAAAGTGGATCTGGAAATATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCATTACATGATACCTTTTCTGCATTTGGGAATATCCTCTCTTGCAAGATAGCCATAGACTCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAGAAGGCCATAGAGAAGCTTAATGGTATGTTGTTAAATGATAAACAAGTATATGTTGGGCCCTTCCTTCGCAAGCAAGAAAGAGACAGTGCAGTTGACAAGACGAGGTTCAACAATGTTTTTGTGAAGAACCTATCAGAATCAATCTCTGATGAAGATTTGAATAAGATTTTTGGTGAATTTGGAACAATTACTAGTGCTGTGGTGATGAGGGATGGGGATGGTAAGTCAAAGTGCTTTGGATTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAGTTGATGAAAAGGAATGGTTTGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAATTGAAACTTCGATTTGAGCAGAGCATGAAAGAAGCAGCTGACAAATATCAAGGTGCTAATCTATATGTTAAAAATTTAGATGACACCATTAGTGATGATAAACTTAAGGAGCTGTTCTCTCCATATGGAACCATTACCTCATGCAAGGTCATGAGAGATCCCAATGGAATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTACTGAGGAGGCATCTCGAGCACTCTTGGAGATGAATGGCAAAATGTTGGTAAGCAAACCTCTGTATGTTGCTCTGGCCCAACGAAAAGAGGATAGAAGAGCTAGATTGCAGGCTCAGTTTGCTCAAATGCGGCCTGTTCCAATGGCACCTTCTGTTGCTCCTCGGATGCCAATGTACCCTCCTGGTGTTCCGGGTATGGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATAATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAGTTAGTGCCTGGTATGAGGCCTGGTGGGGCTCCTATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGTCCTGGTGGAAGACGTGCAGGGGCAGTGCAGCAGACCCAGCATCCTGGTCCAATTATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTATCCTCCTGGTAGGGGCCTGCCTGATGCTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTGCCATATGACATGGGTGGAATGCCGCTGCGTGAGTCAGGAATATCCCAGCAAATTCCTATTGGGGCTTTGGCTTCTGCCCTGGCAAATGCCTCTCCTGAACAGCAAAGGACGATGTTGGGTGAGAATCTCTATCCTCTTGTGGAACAGTTGGAACCTGATAATTCTGCTAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAGGTTCTACACTTGCTCGAGTCCCCAGAAGCTCTGAAAGCAAAGGTTGCTGAGGCAATGGATGTCCTGAGGAATGTGGCTCAGCAGCAGCAGGCTGGTGTTGCTGCCGATCAGCTGGCCTCATTATCACTTAATGACAACCTTGTTTCTTGA 1950 0.4585 MAQVQPQNAILGTNGAAAAGGSGQFGASSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNFSNAQDAARAMDMLNFTPLNNKPVRIMYSHRDPSIRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKIAIDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKTRFNNVFVKNLSESISDEDLNKIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKVDEKEWFVGKAQKKSERELELKLRFEQSMKEAADKYQGANLYVKNLDDTISDDKLKELFSPYGTITSCKVMRDPNGISRGSGFVAFSTTEEASRALLEMNGKMLVSKPLYVALAQRKEDRRARLQAQFAQMRPVPMAPSVAPRMPMYPPGVPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRAGAVQQTQHPGPIMQQQMLPRGRVYRYPPGRGLPDAPMPGVAGGMFSVPYDMGGMPLRESGISQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNSAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGVAADQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0272 649 CDD RRM1_I_PABPs 29 108 - -
Lele36g0272 649 SMART poly_2 562 625 IPR002004 GO:0003723
Lele36g0272 649 CDD RRM3_I_PABPs 206 285 - -
Lele36g0272 649 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lele36g0272 649 SMART rrm1_1 311 383 IPR000504 GO:0003723
Lele36g0272 649 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lele36g0272 649 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele36g0272 649 FunFam Polyadenylate-binding protein 293 398 - -
Lele36g0272 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Lele36g0272 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lele36g0272 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 99 IPR000504 GO:0003723
Lele36g0272 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lele36g0272 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lele36g0272 649 PRINTS Paraneoplastic encephalomyelitis antigen family signature 330 342 IPR002343 GO:0003723|GO:1990904
Lele36g0272 649 PRINTS Paraneoplastic encephalomyelitis antigen family signature 207 222 IPR002343 GO:0003723|GO:1990904
Lele36g0272 649 PRINTS Paraneoplastic encephalomyelitis antigen family signature 297 314 IPR002343 GO:0003723|GO:1990904
Lele36g0272 649 PRINTS Paraneoplastic encephalomyelitis antigen family signature 315 330 IPR002343 GO:0003723|GO:1990904
Lele36g0272 649 SUPERFAMILY RNA-binding domain, RBD 29 197 IPR035979 GO:0003676
Lele36g0272 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lele36g0272 649 PANTHER RNA BINDING PROTEIN 29 90 - -
Lele36g0272 649 Gene3D - 25 116 IPR012677 -
Lele36g0272 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Lele36g0272 649 FunFam Polyadenylate-binding protein 197 292 - -
Lele36g0272 649 FunFam Polyadenylate-binding protein 546 628 - -
Lele36g0272 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Lele36g0272 649 Gene3D - 293 395 IPR012677 -
Lele36g0272 649 Gene3D - 192 292 IPR012677 -
Lele36g0272 649 FunFam Polyadenylate-binding protein 15 116 - -
Lele36g0272 649 Gene3D - 117 189 IPR012677 -
Lele36g0272 649 SUPERFAMILY PABC (PABP) domain 491 643 IPR036053 GO:0003723
Lele36g0272 649 SMART rrm2_1 311 383 IPR003954 GO:0003676
Lele36g0272 649 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lele36g0272 649 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lele36g0272 649 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lele36g0272 649 CDD RRM2_I_PABPs 114 190 IPR045305 -
Lele36g0272 649 CDD RRM4_I_PABPs 309 387 - -
Lele36g0272 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Lele36g0272 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723
Lele36g0272 649 FunFam Polyadenylate-binding protein 117 190 - -
Lele36g0272 649 MobiDBLite consensus disorder prediction 472 491 - -
Lele36g0272 649 Gene3D - 546 629 - -
Lele36g0272 649 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Lele36g0272 649 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0272 Lele-ChrLele36 1619000 1623202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0272 24 648 Eukaryotic Initiation Factors Gene Family AT1G49760 74.646 0.0 917