Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0243 ATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCCACATCAGCAGCAGTGGACGTCGCAGCGGCCGCATCACTATCAGCAGCAATGGATGGCTATGCAGTACCCTGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCACAACATTACGTGCCTTACGTCCACCATTATGTGCCTCCTCACCAGCAGCAGCAGCAGAAGCAAGGGTCCTCCGATGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAAATACCTACATAACTGTTTTGCTCATACAGGCGAGTTTTCTGAACCAAAGGATTTATTTAGATCTCTCAATTGTATTCTGGACACTATTGAAAGCCTTGTTGTCTCAGCCAAGGTTATACGAAATAAGCAAACTAACCAGTCTGAGGGGTATGGATTTGTTGAGTTTTATGCACGTGCAACAGCAGAGAATGTTTTGAACAGCTACAATGGTACTATGATGCCAAATACCGATCAGCCCTTCCATCTAAATTGGGCTACTTTCAGCGCGGTTGATAGGAGATCTGATGCTAGTTCTTCTGATCTGTCTATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATACTGCATGAAACCTTTGCTAGCAGATATACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGACTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGTCCTATGCGTATAGGTGTCGCAACCCCAAAGAAGTTCCATGGGTATCAACAACAACATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCATCTGATGGAGCTACCGCACAAGGTTCCCAGCCTGAAGGGGACTCAAATAACACAACCAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACCGTACGACTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACTGATTCCAATGGAGGTCACTATGGAAGCCAGGGGTCTGCCATGAGACAAAACCAAGATATCAGTATGAACGTTGCTGCTGCAGTTCAAGGGGCATCCTGA 1146 0.4625 MAQPTNTADLNQHPHQQQWTSQRPHHYQQQWMAMQYPAAAMAMMQQQMMMYPQHYVPYVHHYVPPHQQQQQKQGSSDEIRTIWLGDLHHWMDEKYLHNCFAHTGEFSEPKDLFRSLNCILDTIESLVVSAKVIRNKQTNQSEGYGFVEFYARATAENVLNSYNGTMMPNTDQPFHLNWATFSAVDRRSDASSSDLSIFVGDLAVDVTDAILHETFASRYTSVKGAKVVIDSNTGRSKGYGFVRFGDETERTRAMTEMNGCYCSNRPMRIGVATPKKFHGYQQQHSSQAVVLANGHSSDGATAQGSQPEGDSNNTTNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGSQGSAMRQNQDISMNVAAAVQGAS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0243 381 CDD RRM1_SECp43_like 81 182 - -
Lele36g0243 381 FunFam Polyadenylate-binding protein RBP47B 79 180 - -
Lele36g0243 381 SUPERFAMILY RNA-binding domain, RBD 315 360 IPR035979 GO:0003676
Lele36g0243 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 181 IPR000504 GO:0003723
Lele36g0243 381 MobiDBLite consensus disorder prediction 295 314 - -
Lele36g0243 381 MobiDBLite consensus disorder prediction 337 362 - -
Lele36g0243 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 170 IPR000504 GO:0003723
Lele36g0243 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Lele36g0243 381 Gene3D - 79 180 IPR012677 -
Lele36g0243 381 SMART rrm1_1 81 177 IPR000504 GO:0003723
Lele36g0243 381 SMART rrm1_1 196 270 IPR000504 GO:0003723
Lele36g0243 381 MobiDBLite consensus disorder prediction 1 24 - -
Lele36g0243 381 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 68 345 - -
Lele36g0243 381 CDD RRM2_SECp43_like 194 273 - -
Lele36g0243 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 274 IPR000504 GO:0003723
Lele36g0243 381 SUPERFAMILY RNA-binding domain, RBD 78 277 IPR035979 GO:0003676
Lele36g0243 381 FunFam Polyadenylate-binding protein RBP47B 182 285 - -
Lele36g0243 381 Gene3D - 181 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0243 Lele-ChrLele36 1452338 1456100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0243 62 276 Eukaryotic Initiation Factors Gene Family AT4G34110 23.246 4.11e-10 59.7