Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0232 ATGGGGAGGCCAAGGTGCTTCTTGGACATAAGCATAGGCGAAGAGTTGGAAGGGAGGATCGTTATGGAGCTTTACAACGACGTCGTTCCCAAAACCGCTGAGAACTTCAGAGCTCTCTGCACTGGCGAGAAAGGCATCGCCCCTAACACCGGTTTACCCCTCCATTACAAGGGTTGTTGCTTCCATCGGATTATTAGAAGCTTTATGATCCAAGGAGGAGATATATCTGCTGGAGATGGTACTGGTGGAGAGTCTATATACGGTATGAAGTTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTCTGGTCCTAACACCAATGGATCTCAGTTTTTCATTACCACTACTCGAACTCCTCATCTTGATGGTAAGCATGTGGTATTTGGCAAGGTAGTAAAGGGAATGGGAGTGTTTCGTTCGATGGAGCTTGTTACAACCGGCGATGAAGATCGCCCTATTGTTGATGTTAAAATCGTGAACTGTGGAGAAATTCCTCAAGGAGCAGATGATGGAATATCCAACTTTTTCAAAGACGGAGATACTTATCCTGATTGGCCAGTAGACCTTGATGAAAGCCCTAATGATATCCATTGGTGGATTAATGCTGTTGATTCCATTAAAAATTTTGGTAACGTGTACTTCAAGAAACAAGATTATAAAATGGCTTTAAAGAAGTATCGGAAGGCTCTATGCTTCGCCGATCTTTGCTGGGAGAAAGAAGGAGCTGATGCGGACAAGAGTTCAAGTTTGAGAAAAACGAAGTCTCAAATTTTTTCAAACTGCTCTGCTTGTAAATTGAAGTTAGGGGATCTCCAAGGAGCATTATTAGATACAGAATTTGCAATGCGCGAAGCAGACAACAATGTCAAAGCTTTGTTTCGCCAAGGGCAGGCACACATGGCGCTCAATGACATTTATGCTGCAGTTGAAAGCTTCAAAAAGGCACTAATCTTGGAGCCAAAGGATGCTGGAATAAAAAAGGAACTTACTGCTGCCAGGAGGATGGTGAGTGTATCTGCAAGTTTAGCAAAGCATTCTAGCGTCAAACAAATGCCAATTGGTGTATCTAACTGA 1101 0.4269 MGRPRCFLDISIGEELEGRIVMELYNDVVPKTAENFRALCTGEKGIAPNTGLPLHYKGCCFHRIIRSFMIQGGDISAGDGTGGESIYGMKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGMGVFRSMELVTTGDEDRPIVDVKIVNCGEIPQGADDGISNFFKDGDTYPDWPVDLDESPNDIHWWINAVDSIKNFGNVYFKKQDYKMALKKYRKALCFADLCWEKEGADADKSSSLRKTKSQIFSNCSACKLKLGDLQGALLDTEFAMREADNNVKALFRQGQAHMALNDIYAAVESFKKALILEPKDAGIKKELTAARRMVSVSASLAKHSSVKQMPIGVSN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0232 366 Gene3D Tetratricopeptide repeat domain 208 360 IPR011990 GO:0005515
Lele36g0232 366 FunFam peptidyl-prolyl cis-trans isomerase D 210 360 - -
Lele36g0232 366 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Lele36g0232 366 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Lele36g0232 366 CDD cyclophilin_ABH_like 4 171 - -
Lele36g0232 366 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
Lele36g0232 366 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele36g0232 366 SMART tpr_5 298 331 IPR019734 GO:0005515
Lele36g0232 366 SMART tpr_5 212 245 IPR019734 GO:0005515
Lele36g0232 366 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Lele36g0232 366 SUPERFAMILY TPR-like 210 341 IPR011990 GO:0005515
Lele36g0232 366 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Lele36g0232 366 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Lele36g0232 366 Gene3D - 1 179 IPR029000 -
Lele36g0232 366 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lele36g0232 366 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0232 Lele-ChrLele36 1403115 1405689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0232 14 168 U-box Gene Family AT5G67530 46.795 2.90e-37 139