Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0175 ATGTCTGTAACGGAGCTCAAGGAGCGTCACTTGGCGGTCACGGAGACGGTGAACACCCTCAGGGAGCGGTTGAAGCAGCGACGACTTTCTTTACTCGATACAGATGGGTCATATGGGAAAGGTAATTTATGGTTCCGCAGAAAGTTAATTCCATATCTTATTCGTGGTCATGGAGAAACAGTTATCACATTGGTATATTCATTGGACTGGGCATCTGAAAAGAATAGAATTGTTAGTGCATCCCAAGATGGTCGACTTATAGTATGGAATGCTCTTACTAGCCAGAAGACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACCTGTGATTTCTCGGCAACTGGTCAGTCTGTTGCATGCGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTGAATTCCCCTACTGACAGGGACGGTAATCTGCCTGTTTCACGGATGCTTAGTGGACATAAGGGTTATGTCTCCTCTTGTCAGTTTGTTCCAGATGATGACACTCACCTAATTACCAGTTCTGGTGATCAGACTTGTGTTTTGTGGGATATTACTACAGGCCTTAGAACATCTGTTTTTGGAGGTGAATTTCAGTCCGGACATACTGCAGATGTATTAAGCATTTCTATCAATGGATCCAATTCAAAATTGTTTGTATCTGGTTCTTGTGATGGAACTGCCCGGTTGTGGGATACACGTGTGGCAAGCCGAGCTGTGCAGACATTTCATGGGCACGAGGGAGATGTTAATGCTGTCAAATTCTTTCCTGATGGAAACAGATTTGGAACTGGTTCTGATGATGGAACTTGCCTACTATTTGACACTAGGACTGGGCACCAACTACAATCATACTATCAACAACACAGTGACAACGACACCCCACATGTGACCTCCATTGCATTCTCCATATCGGGAAGACTTCTTTTTGCTGGATACACGAATGGTGATTGCTATGTTTGGGACACTTTATTGGCTAAGATGGTATTGAATTTAGGATCTCTTCAGAACTCTCATGAGGGCAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGCTGGGACTCAAACTTAAAGATTTGGGCGTTTGGAGGGCTTAGAAAGGTGGTGTGA 1125 0.4436 MSVTELKERHLAVTETVNTLRERLKQRRLSLLDTDGSYGKGNLWFRRKLIPYLIRGHGETVITLVYSLDWASEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCDFSATGQSVACGGLDSVCSIFNLNSPTDRDGNLPVSRMLSGHKGYVSSCQFVPDDDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKLFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCLLFDTRTGHQLQSYYQQHSDNDTPHVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKMVLNLGSLQNSHEGRISCLGLSADGSALCTGSWDSNLKIWAFGGLRKVV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0175 374 CDD WD40 54 366 - -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 99 IPR001680 GO:0005515
Lele36g0175 374 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 366 IPR016346 GO:0007165
Lele36g0175 374 ProSitePatterns Trp-Asp (WD) repeats signature. 169 183 IPR019775 -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 232 - -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 365 IPR001680 GO:0005515
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 239 IPR001680 GO:0005515
Lele36g0175 374 PRINTS G protein beta WD-40 repeat signature 77 91 IPR020472 -
Lele36g0175 374 PRINTS G protein beta WD-40 repeat signature 169 183 IPR020472 -
Lele36g0175 374 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Lele36g0175 374 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Lele36g0175 374 Pfam WD domain, G-beta repeat 147 182 IPR001680 GO:0005515
Lele36g0175 374 Pfam WD domain, G-beta repeat 283 320 IPR001680 GO:0005515
Lele36g0175 374 Pfam WD domain, G-beta repeat 55 90 IPR001680 GO:0005515
Lele36g0175 374 Pfam WD domain, G-beta repeat 336 365 IPR001680 GO:0005515
Lele36g0175 374 Pfam WD domain, G-beta repeat 198 230 IPR001680 GO:0005515
Lele36g0175 374 PRINTS Beta G protein (transducin) signature 77 91 IPR001632 -
Lele36g0175 374 PRINTS Beta G protein (transducin) signature 96 111 IPR001632 -
Lele36g0175 374 PRINTS Beta G protein (transducin) signature 58 74 IPR001632 -
Lele36g0175 374 PRINTS Beta G protein (transducin) signature 114 131 IPR001632 -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 374 - -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 277 - -
Lele36g0175 374 FunFam Guanine nucleotide-binding protein subunit beta 2 366 - -
Lele36g0175 374 Gene3D - 12 366 IPR015943 GO:0005515
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 186 - -
Lele36g0175 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 191 IPR001680 GO:0005515
Lele36g0175 374 SUPERFAMILY WD40 repeat-like 45 365 IPR036322 GO:0005515
Lele36g0175 374 PIRSF GNBP_B 1 368 - -
Lele36g0175 374 SMART WD40_4 189 230 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 93 132 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 142 182 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 234 273 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 326 366 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 276 320 IPR001680 GO:0005515
Lele36g0175 374 SMART WD40_4 47 90 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0175 Lele-ChrLele36 1039732 1043495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0175 89 367 U-box Gene Family AT1G04510 23.867 1.84e-11 63.5