LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele36g0171	ATGGCCTCCGACGACTCTCCCGGCCATGGTCTTGCTCAGCTCTCTAACAAAACTCCATTTCTCGGTTTAAAGCTCTACTTCCTGATCGGCATTTTCCTTCTAATCGTGCTGGTAGTTTTGCTTTTGATCTTTCTGTGCACTCGCCGGAATCGAATCTCGACGAATCCTAAAATGCGCGTGAAGCACGGTTCTGGGATGATTCCCTTGGTCTCCAAGGAGATTGTGGAAGTCAAAGCCTTGGATCTCGAGCAGAATAGTGAACAAGCAGGGGTTAAAATCCAGGATAAGGAGCCGAAGAAGGAGAAGGTTGAGATTGAGGTTGAGAGAAGAGGGAAGAAGACGAGCGACGAGAGTGACGTGTTCGGGGGGAACCGTAGTGACGTGTCGATGGACGCACCGAACATATGGTGGGGACGATGGTATAACTTGAAGGAGCTGGAGGATGCGACACGTGGGTTTGCTGAAGAAAGTGTAATCGGTGAAGGAGGGTATGGTATTGTATACAAAGGAGTCCTTGAAGACGGGTCGGTGGTAGCTGTGAAGAATCTTCTCGACAACAAAGGTCAAGCAGAGAGGGAGTTCAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCATAAGAATTTGGTGGGCTTAGTTGGATATTGTGCAGAAGGTCCTCAAAGGATGCTTGTTTATGAGTACGTTGATAATGGAAATTTGGAGCAGTGGTTGCATGGTGGTGATATTGGGCCTGTTAGTCCCTTGACATGGGATATACGGATGAAAATTGCCATTGGGACAGCAAAAGGGGTTGCCTATCTGCATGAAGGGTTAGAACCCAAAGTGGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGACAGAAAGTGGAATGCTAAAGTATCAGACTTTGGACTAGCCAAGTTATTAGGCTCTGAGAAGACCTATGTGACCACACGTGTAATGGGGACATTTGGATACGTTTCACCTGAGTATGCAAGCACAGGAATGCTTAACGAGGGAAGTGATGTGTATAGCTTTGGAGTTCTACTTATGGAGATAATTACAGGAAGAAGTCCCATCGACTATTCTAGACCACCTAGAGAGATGAATTTGATTGATTGGTTCAAGGGAATGGTAGCAAGTCGTCGCGGGGAAGACCTGGTAGATCCTTTGATTGAGGTTCAACCCTCTCCGAGATCTTTGAAACGAGCTTTGCTGGTTTGCCTACGCTGTGTAGATTTGGACGTTAGTAAACGACCAAAGATGGGTCAAATCATTCATATGCTTGAGGCAGATGATTTCCCCTTTCGTTCTGAAATTCGTACAATAAGAGAGAGAGAGCTGGCTCCTCCTTCGCATTCCACAATTCCCCGTAAAGTTCAATATCTCCCTGAGAATGAGGATTCTATAGAACAGTCAAGATGGAGATGA	1419	0.4602	MASDDSPGHGLAQLSNKTPFLGLKLYFLIGIFLLIVLVVLLLIFLCTRRNRISTNPKMRVKHGSGMIPLVSKEIVEVKALDLEQNSEQAGVKIQDKEPKKEKVEIEVERRGKKTSDESDVFGGNRSDVSMDAPNIWWGRWYNLKELEDATRGFAEESVIGEGGYGIVYKGVLEDGSVVAVKNLLDNKGQAEREFKVEVEAIGKVRHKNLVGLVGYCAEGPQRMLVYEYVDNGNLEQWLHGGDIGPVSPLTWDIRMKIAIGTAKGVAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLGSEKTYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPREMNLIDWFKGMVASRRGEDLVDPLIEVQPSPRSLKRALLVCLRCVDLDVSKRPKMGQIIHMLEADDFPFRSEIRTIRERELAPPSHSTIPRKVQYLPENEDSIEQSRWR	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele36g0171	472	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	276	288	IPR008271	GO:0004672\|GO:0006468
	Lele36g0171	472	CDD	STKc_IRAK	159	426	-	-
	Lele36g0171	472	Gene3D	Phosphorylase Kinase; domain 1	130	228	-	-
	Lele36g0171	472	PANTHER	OS01G0323000 PROTEIN	12	443	-	-
	Lele36g0171	472	SUPERFAMILY	Protein kinase-like (PK-like)	127	426	IPR011009	-
	Lele36g0171	472	Gene3D	Transferase(Phosphotransferase) domain 1	229	436	-	-
	Lele36g0171	472	ProSitePatterns	Protein kinases ATP-binding region signature.	159	181	IPR017441	GO:0005524
	Lele36g0171	472	ProSiteProfiles	Protein kinase domain profile.	153	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele36g0171	472	FunFam	Probable serine/threonine-protein kinase At1g01540	133	228	-	-
	Lele36g0171	472	FunFam	Putative receptor-like serine/threonine-protein kinase	229	440	-	-
	Lele36g0171	472	Pfam	Protein kinase domain	154	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele36g0171	472	SMART	serkin_6	153	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele36g0171	Lele-ChrLele36	1022172	1025510	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele36g0171	16	421	Trihelix Transcription Factor Family	AT1G68690	38.350	8.07e-89	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Lele36g0171		Pkinase	2.7e-45	CL0016