Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0162 ATGAAAGCAATTCATCGAACTAGCAATGGATTCAAGTTAAAAAATCCCCGGCTATATAACTGGCCTTGGGCTTCACTAGTTTTCCTCGTGCTCTCCACTTCTTACGGTGGATTTTCTTTAATCCTCCTTTACCTATTTCCCTTTCAGTCCCCATTTTCTAGGGTTTCGACCCACTTTCTCAGATCTATGGCGTCCGCTGAAGTTGAATACAGGTGCTTCGTTGGGGGGCTCGCATGGGCCACCGACAGCGATGCCCTTGAGAAGGCCTTTGCTCCCTTTGGCGAAATCGTCGAATCGAAGGTTATTAACGATCGTGAGACTGGCAGATCAAGAGGGTTCGGCTTTGTAACCTTCTCGTCTGAGCAGGCCATGAGAGATGCCATCGAGGGGATGAACGGCCAGGATCTCGATGGCCGTAATATCACTGTCAACGAGGCTCAGTCCCGTGGCCGAGGAGGAGGCGGCGGCGGAGGCGGCGGATATGGAAGTGGAGGCGGATATGGTGGTGGTGGAGGTGGATACGGAGGTGGAGGTCGCCGTGAAGGTGGATACAACCGTAACGGCGGGGGAGGATACGGAGGAAACGGCGGCGGCGGCTATGGCGGCGGCGGTTATGGCGGCGGACGTGACCGTGGTTATGGTGGTGGTGACGGTGGATCTCGTTACTCCAGAGGAGGAGGTGCTTCTGACGGAAGCTGGAGGAACTAG 708 0.5523 MKAIHRTSNGFKLKNPRLYNWPWASLVFLVLSTSYGGFSLILLYLFPFQSPFSRVSTHFLRSMASAEVEYRCFVGGLAWATDSDALEKAFAPFGEIVESKVINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRNITVNEAQSRGRGGGGGGGGGYGSGGGYGGGGGGYGGGGRREGGYNRNGGGGYGGNGGGGYGGGGYGGGRDRGYGGGDGGSRYSRGGGASDGSWRN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0162 235 CDD RRM_HP0827_like 73 147 - -
Lele36g0162 235 Gene3D - 55 167 IPR012677 -
Lele36g0162 235 SMART rrm1_1 71 144 IPR000504 GO:0003723
Lele36g0162 235 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 66 224 - -
Lele36g0162 235 SUPERFAMILY RNA-binding domain, RBD 70 178 IPR035979 GO:0003676
Lele36g0162 235 FunFam Glycine-rich RNA-binding protein GRP1A 64 187 - -
Lele36g0162 235 MobiDBLite consensus disorder prediction 187 235 - -
Lele36g0162 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Lele36g0162 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0162 Lele-ChrLele36 979960 982506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0162 48 151 Eukaryotic Initiation Factors Gene Family AT2G23350 31.429 2.98e-07 48.9