Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0126 ATGGCTAAACCAAAGGCTCCCAGACGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCGTTAGAGCCGGCGACTGCGTTTTTATGCGGCCCTCCGAGCCGTCGAAGCCGTCCTACGTGGCTAGGATCGAGCGGATCGAGGCCGACTCTCGAGGCGCCAACGTTAAGGTTCACGTCCGTTGGTACTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGCCAGTTCCACGGTTCTAAAGAGGTTTTCCTCTCTGATCACTTTGATGTTCAGAGCGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGGGCTACACGAAGCTCGATGCTGTCGGAAATGATGATTTCTTCTGCCGTTTCGAATATAATTCCGCCACCGGAGCATTCAATCCAGATAGAGTCGCCGTGTATTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTTCAGTGTGAGGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACAACTTCTTCTGTGAAAGTTGTTCTGCGGAAGATCAAAATAAGTTGCCAAATTCTCATGCTGCGAGACATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTACCAAACAAACACGGAGGCAATGTTTTCTGCAGTGAACTGTGACCTTTCTACTTTGACGGAATGA 711 0.4895 MAKPKAPRRTLESYTVKHINKTVRAGDCVFMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDNFFCESCSAEDQNKLPNSHAARHSDTKVDTKRRRRYQTNTEAMFSAVNCDLSTLTE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0126 236 SMART BAH_4 21 137 IPR001025 GO:0003682
Lele36g0126 236 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Lele36g0126 236 MobiDBLite consensus disorder prediction 196 212 - -
Lele36g0126 236 Pfam PHD-finger 141 189 IPR019787 -
Lele36g0126 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
Lele36g0126 236 SMART PHD_3 141 188 IPR001965 -
Lele36g0126 236 MobiDBLite consensus disorder prediction 192 212 - -
Lele36g0126 236 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele36g0126 236 FunFam Chromatin remodeling protein EBS 1 133 - -
Lele36g0126 236 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele36g0126 236 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lele36g0126 236 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lele36g0126 236 Gene3D - 2 133 IPR043151 -
Lele36g0126 236 PANTHER OS08G0421900 PROTEIN 5 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0126 Lele-ChrLele36 767678 771344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0126 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 7.71e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele36g0126 BAH 2.8e-22 No_clan