Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele36g0123 | ATGGCTTCCGAGTCTTCTCCGACGAATTTCAACAACGGTCCTTCCTCTCCCGATGATTCATATTCCAGCCCAATCGGCAACACATTATCCTCTCCTGGGGATGATGCTCGCCACAGAGGGCGCCGGCGTTCGTCAACACCGTCTGCATTCGCTACTCCTCCGTCTAATCGATCTCGATTCGTTTCCTCCGATGCTACTCCAACTCCAACGAGGTCCAGGCAAAGGGGAGGTGGTCGGAGAGCGTCTATGTCCACCCCTGTTGCAGCCACGCCCACATCCACTGATGACGTTCCCATGTCATCAGAAGGCGGAGAGGGTTACAATGGAGACGATATTAGGCCTACCTTCGTTTGGGGTACTAATATAAGCGTCGAAGATGTGAATGATGCGATTCAGAGGTTTTTAAAGCACTTCAGAGAGCAGTCATCTCAGAGCGACGGGCTGCATATGGAGGGGAAATATGAGACGGCTATCAAACAAGTCATTGAAATGGAGGGAGAGTCACTAGACGTCGATGCACACGATGTATTTGATTATGATCCGGATTTGTACACAAAAATGGTCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATATGGTTCTGATGAATATGGTTAGTAGAATCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTAAAAACCTCGACTTCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCAATTATACCAGAAATCAAGGAAGCTATATTTAGATGTCTCGTGTGTGGATACTGCTCAGAACCTGTTGCTGTAGAGAGAGGGCGAATAGCTGAACCTACTAAATGTCTGAGGGAAGAGTGTCAAGCCAGAAACTCCATGACACTGGTTCACAACCGATGCAGTTTCACAGACAAGCAAATTGTGAGGCTTCAGGAGACACCTGATGAGATACCTGAAGGGGGAACACCACACACAGTAAGCTTGCTGATGCATGACAAGCTAGTGGATGCTGGAAAGCCGGGGGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAAAGAACTGTTAAATCACTGTTCAAGACTTATATTGACTGTCTTCATATTAAGAAGACTGATAAGTCAAGAATGATGTCAGAGGATGCAATGGATGTTGAAACTAGCCTGGGCAACAGAAATACAGAAGAAATTCATTTTGATGAAGAAAAGGTGGCTCAACTAAAAGAGCTCTCAAAACAGCCAGATATATATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGAAATGCTTTGAAGTTGGCATCTGGCGCTAACTTCCGTGGTGATCTTAATATATTACTAGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACATAAACTTTCGCCACGTGGCATTTACACAAGTGGAAGGGGGAGCTCTGCTGTTGGACTGACTGCTTATGTTACCAAAGATCCTGAAACAGGCGAAACTGTTCTCGAGAGTGGCGCTCTAGTTTTAAGCGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGAAGCATGTTACATGAGGTTGATTGCATTCTTGATTTATTTCAGGTGATGGAACAACAAACTGTATCAATAGCAAAAGCAGGTATTATTGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAATCCCAGCGGGTCACGATATAACCCTCGCTTGTCAGTCATTGACAACATACAACTTCCTCCTACACTTCTGTCCAGGTTTGATTTGATCTACTTAATTCTTGACAAGGCTGATGAACAGACAGATAGACGACTTGCCAAGCATATTGTTTCCTTACACTTTGAGAATCCTGAGAGCTTAGAGCAAGATGTGTTGGATCTCCCAACGTTAGCTGCTTATGTGAGCTATGCTCGAAAGCATATACACCCACAACTATCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTTGAGATAAGAAGGAGAGGCAATTTTCCAGGGAGTAGCAAGAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTAATACGGCTCAGCGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAAAAGCGGGATGTAATGGAGGCATTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACAGATCACTCTACTGGAACCATTGACATGGATCTTATTACTACTGGAGTTTCTGCAAGTGAAAGGATGAGACGAGAAAGTCTGGTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTGTTGGAGTTACTGGAAGAGTTGAAGAAACAGAACGCCAGTGAACTCCACCTCAGTGATCTGAGAAATGCAGTTGCTACTTTGGCCAGCGAAGGATTTGTTGCTCTTCATGGTGACAGTATAAAAAGATCGTGA | 2547 | 0.448 | MASESSPTNFNNGPSSPDDSYSSPIGNTLSSPGDDARHRGRRRSSTPSAFATPPSNRSRFVSSDATPTPTRSRQRGGGRRASMSTPVAATPTSTDDVPMSSEGGEGYNGDDIRPTFVWGTNISVEDVNDAIQRFLKHFREQSSQSDGLHMEGKYETAIKQVIEMEGESLDVDAHDVFDYDPDLYTKMVRYPLEVLAIFDMVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIKEAIFRCLVCGYCSEPVAVERGRIAEPTKCLREECQARNSMTLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMMSEDAMDVETSLGNRNTEEIHFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDLNILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVDCILDLFQVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESLEQDVLDLPTLAAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQATRNIIMEKMQIGGPSMRLLELLEELKKQNASELHLSDLRNAVATLASEGFVALHGDSIKRS | 848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 446 | 457 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 601 | 618 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 753 | 762 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele36g0123 | 848 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Lele36g0123 | 848 | ProSiteProfiles | MCM family domain profile. | 430 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | MobiDBLite | consensus disorder prediction | 45 | 99 | - | - | |
| Lele36g0123 | 848 | Gene3D | - | 758 | 839 | IPR036388 | - | |
| Lele36g0123 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 149 | 380 | IPR012340 | - | |
| Lele36g0123 | 848 | Pfam | MCM N-terminal domain | 130 | 226 | IPR027925 | - | |
| Lele36g0123 | 848 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - | |
| Lele36g0123 | 848 | Gene3D | - | 230 | 369 | IPR012340 | - | |
| Lele36g0123 | 848 | Pfam | MCM AAA-lid domain | 665 | 751 | IPR041562 | - | |
| Lele36g0123 | 848 | ProSitePatterns | MCM family signature. | 539 | 547 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele36g0123 | 848 | FunFam | DNA helicase | 411 | 758 | - | - | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 619 | 627 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 592 | 604 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 568 | 581 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 471 | 486 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
| Lele36g0123 | 848 | CDD | MCM4 | 433 | 751 | - | - | |
| Lele36g0123 | 848 | FunFam | DNA helicase | 257 | 309 | - | - | |
| Lele36g0123 | 848 | Gene3D | - | 257 | 309 | - | - | |
| Lele36g0123 | 848 | Gene3D | - | 121 | 224 | - | - | |
| Lele36g0123 | 848 | Pfam | MCM P-loop domain | 418 | 649 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 441 | 765 | IPR027417 | - | |
| Lele36g0123 | 848 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 128 | 811 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | SMART | mcm | 226 | 753 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele36g0123 | 848 | Gene3D | - | 408 | 757 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele36g0123 | Lele-ChrLele36 | 745847 | 751564 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele36g0123 | 1 | 847 | Core DNA Replication Machinery Family | AT2G16440 | 74.709 | 0.0 | 1274 |