Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0110 ATGACAAACCCTGCAGAGGATCCTCCTTCGCCATCACAGGGCATCCCGCCGTCGCCGTCGCATGCCACCGTCGAAGACATGCCACTCGCCGGGAGAGATGACGCTGATGAAGCGAAGACCCTCCTACACTGTGATGAAGCCGAAGAGAAGCCCCCCTCTCCTTCTCTTCCACCTGCTCCCAGGGAAGTGTCAGAGGAAATCAACGTAGCTGACATTGCTGTGGAGACCGAGAAGTTGGGGGAGAAGGCAGGCGAGGCTGTCATGTCAAATGAAAATGAGGAAGCCGAGAAAGTAGTTATGGGAATGGAGACAGGAGACACGTATGCAGCTTGCAGCTTAGGCAAGGCAGCTGAAACAACGGAGGCATGGAAGTTGGAAGAGGAAACCAATGTAGCTAACATTGCTGAGGACATTACAAAGGCAGAAGAGGAAGCCTATGTAGCTAACATTGCCGAGGACATTACAAAGGTGGAAGAGGAAACTGATGTAGCTAACATTGCTGAGGAAAATAAGAAGGTGGAAGAGGAAACTGATGTTTCTAATATTGCTGATGATACTGCGAAGGTGGCAGAGGAAACTAATGCAGCTAACATTGCTGAGGACATTACAAAGGTGAAAGAGGACGTAGATGTAGCTGACATTGTTGAAAGGGAGGTAGATGTGGCTGCCATGTCATATGAGAAAGAGGAAGCGGAAAAAGTTGTAGCTAGGATGGAGCCAGCAGACGCATATGTGGCTTGTTCCCTAGGTGAGACAACTGAGGCGTTAGAGATCAGGGAGCTGGATGAAGCGGCAGGTGAAGATGGCATGCCAGATGAGAATGAGGAAGCTGAGAAAGTAGTAGCGGGGATGGAGATTGAAGATGGAACTGTGTCTTCCACCCTAGGTGATACAACTGAGGCAGATGGAATTGGCATAGAGGCTGAAGATAAGGCGGAGGCAGTAGAGGTGTTGAATGTGATTGGCACAGGCGAAGGTACTACTGACACGGAAGAGGATGCAGATGGAGCTGATGGAAGGGAGGAGGTCCTAGAGGCAGAAGAGGTTGAGGTAGCCAATGAAGCAGATTTGATGGAAGAGGAAGTAAATGTTGCTGAAATGGCAGAATATACAGGGGGTGCTGAGTTGACTGAGGAGATGGAGATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGCAAGAGCTCAAAATATGCAGGGAGAGTTCCAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGATCGCAGGGGATGTCCAAAGGCTTATCATCCTACTTGCGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAGCTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTGTGTGTTAGGGGAAAGAATGGCTTTTGCGAGACATGTATGAGGACTGTAATGCTGATTGAACAGAATGAGCTGGGGAACAAAGACATGGGACAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACAAAGATCTAAAAGGGAAGCTGTCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCGGATATCCTTCTTACCAAGCAGGAATCACCTGATGAGCTCTATGATGCTAATAATGACGGGGAATCACATTCAGATAGCTCTTATGAAAATGTAGAAAGCAGTAGTGTTAAAAGAAGAAAGGACAATAAACGATTGAAGTCCCGTTCCAAGGAGTTGAATTCACATTGCACGATGGCATTGATTGGTGACCAAGGGCCATCTGCAGATGAGAGGTCTGAGTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTATCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCTTACTAAAAGAAGATTCCCAGACTGAAGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGTGATGGCAATATTGATTCCTATCCGAAGACTGGAAAAGACAAAAGACGTAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATACTGATGATTACGCAGCTATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGAATTACTTGAAGATCCAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCCGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGAAAGAGGTTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGAGGCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCCATGGCACTGCAAGCGGTCAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAATATCCTTCCCTTGTGAACTTATTTATTTTTAAGGATAATGTACCTATTCTTTTAAAAACACCTGAGGAACGTCAACGAAGATTGGAGGAAATTCCAGAAATACACGCTGACCCTAATATGGATCCAAGTTATGAGTCTGAGGAAGAAGAAACTGATCCTAAACGACTAGAGAGTTACATGAGACCTAGAGGAACTGCATTTGATCGAAAGGTTAGAGAAATGGTTTCTCCTAGAACAGGTGGTTCTAATGCAAATGATACATGGAGTGGAGCAAGGAAGTATTCTAATATTAATCGTGAGCTAAGCAGAAATTTGTCTAATAAGGGACTCTCTGTTAGAGTTGATGATGTGCCTAATGCTTCTGACGTATTGAATGATGTTCAAAACCTCTGGGGGAGAGATAGGGAAACACAACTATCTAACAGCTGGGAGGGGCAAAAGCTATATTCGAGCTTAGAAAGTAGTGGCAAAAGTATCCAGCCTGTGGTAGCATCCGAGTCTCTTTCTACTACTGTGTCCAATGCTTCTGCTGTATCATCTGTGAAAATGAATGAAACAGACAAGATGTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGTACAGTTACGTAAATGGAATAACACTGGATATTTTCCGGCTGATTTGAGAATTTGGAGAACCGCTGAGAAACAAGACGAGTCTATACTCTTAACTGATGCCTTAGTTGGAAACTTTTCTAAGGAACCATCAGCAGTGGATAAAACTTTTCCGAAGGGTCAGATGGTGCATAATTTAAATTATTCAGCCTCACACTCTGGGAAGCTTCATTTGCCTGCACAACAAGGTGTAGATGCTCAAGTTGGAGGAAGATCAACATTTGATCAGAGTAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTCGGCCAAACCACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTAGCAAATAGACCTTCTCTAATGACAGTTGATATTCCCAAGATGCCTACAAATGTTCGGGGGCCTGATGTTGGTGTTAGAATTGAATCAAGGAATCTTCCTTCTCCTACTCCTCAGACTACCTCTTATGGGACTAAAGGACAGACTTTTGAAAGTAAATGGTCGCCTACTCCTGTCCACTCTGCCGGTTCTGTTGTAGGGAGTCCTTTTCCTGGAGGTCATGGAGGCTTGCAGGCCCCTGTCGCTGCAGAGAAAGTGGTGCAAAGTGCTGATAGTGGTTCAAGTTCACAACCAGCCAAGATTCCCGCCCCACATCCTGGTATTCCTCTTGGTCATCCTCAAGCAACAATAGTGGCAGCTATTACAGCAGATTCCTCAAGAAATACAGGTGCTGACAGTAAAACTGCAAGTATGCAAAAGCTGGCTATGAGCGACCGTAATTCTCATGCTGAAGCTCAAGGTTGGGGATCTGCTTTAGTTCAGAAACCTGAAATGGCTGGTGCAATTCAGATACGAGGGGGTGAACCACAGGCCTGGGGAGGTGTCCATTCAAAGGTAGAATCAAATAATCCTGCTGCTGTGCCTGCCCAACCACCACTGGCTCATGGCCACTGGGCCGATGCTTCATCTATCCAGAATGCTACCTCGTTTAACACTGGAAATTCAATGGGGAATTTCCCCATGCCCGGCATTCAAGACCTGAGACCGCCAACTTCAAGTAATCAACCTAACGTTCCTGCTTCTTTGCCACCGAACGTGCATTGGGGAATGACTGTTGCAGAAAATCAAAGTACTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGGGGACCTCCAGCTGCCAATATGAACATGAATTGGATTCCTGGCCAGGGTCCGGCACCGGGAAACACAAATCCAGGATGGGCTGCTCCCAGTCAGGGACCATCTTCAGCAATGCCTACTGGTTGGGTTGCACCTGGTCAAGGCCATGCTAATGCTAATGGAGGTTGGGTTGTGCCTGGTCAAGGTCTGGCACCTGTTGGTGCTAATCCTGCCAATGCTGGTTGGGTTGCGCCGGCTGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATCATGGAGACAGGTTCCCAAACCATAGGGATCGTGGTCCTCATGGTGGTGAATCAGGCTATGGAGGAGATAAAACATGGATCAGGCAATCTTCGTTTGGTAGTGCCGGCCGGGGAGGAGGTTCTTCAGGGCCTCCTTTCGGGGGGCAGAGAGGAGTGTGCAGGTTTCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTGCACAATTGA 5097 0.4518 MTNPAEDPPSPSQGIPPSPSHATVEDMPLAGRDDADEAKTLLHCDEAEEKPPSPSLPPAPREVSEEINVADIAVETEKLGEKAGEAVMSNENEEAEKVVMGMETGDTYAACSLGKAAETTEAWKLEEETNVANIAEDITKAEEEAYVANIAEDITKVEEETDVANIAEENKKVEEETDVSNIADDTAKVAEETNAANIAEDITKVKEDVDVADIVEREVDVAAMSYEKEEAEKVVARMEPADAYVACSLGETTEALEIRELDEAAGEDGMPDENEEAEKVVAGMEIEDGTVSSTLGDTTEADGIGIEAEDKAEAVEVLNVIGTGEGTTDTEEDADGADGREEVLEAEEVEVANEADLMEEEVNVAEMAEYTGGAELTEEMEMAEEQGRSVSSGKRKRGKSSKYAGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSSCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGNKDMGQVDFDDKSSWEYLFKDYYKDLKGKLSLTYDELAQAKNPWKGSDILLTKQESPDELYDANNDGESHSDSSYENVESSSVKRRKDNKRLKSRSKELNSHCTMALIGDQGPSADERSEWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKRRKTRKKSDERGLQSNTDDYAAIDNHNINLIYLRRNLVEELLEDPDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKKEVVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPSLVNLFIFKDNVPILLKTPEERQRRLEEIPEIHADPNMDPSYESEEEETDPKRLESYMRPRGTAFDRKVREMVSPRTGGSNANDTWSGARKYSNINRELSRNLSNKGLSVRVDDVPNASDVLNDVQNLWGRDRETQLSNSWEGQKLYSSLESSGKSIQPVVASESLSTTVSNASAVSSVKMNETDKMWHYKDPSGKVQGPFSMVQLRKWNNTGYFPADLRIWRTAEKQDESILLTDALVGNFSKEPSAVDKTFPKGQMVHNLNYSASHSGKLHLPAQQGVDAQVGGRSTFDQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSLMTVDIPKMPTNVRGPDVGVRIESRNLPSPTPQTTSYGTKGQTFESKWSPTPVHSAGSVVGSPFPGGHGGLQAPVAAEKVVQSADSGSSSQPAKIPAPHPGIPLGHPQATIVAAITADSSRNTGADSKTASMQKLAMSDRNSHAEAQGWGSALVQKPEMAGAIQIRGGEPQAWGGVHSKVESNNPAAVPAQPPLAHGHWADASSIQNATSFNTGNSMGNFPMPGIQDLRPPTSSNQPNVPASLPPNVHWGMTVAENQSTSWGVMPGNPNLNWGGPPAANMNMNWIPGQGPAPGNTNPGWAAPSQGPSSAMPTGWVAPGQGHANANGGWVVPGQGLAPVGANPANAGWVAPAGGQGMWGNEQNHHGDRFPNHRDRGPHGGESGYGGDKTWIRQSSFGSAGRGGGSSGPPFGGQRGVCRFHESGHCKKGAFCDYLHN 1698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0110 1698 SUPERFAMILY GYF domain 1111 1173 IPR035445 -
Lele36g0110 1698 SMART gyf_5 1122 1177 IPR003169 GO:0005515
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1 65 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1289 1314 - -
Lele36g0110 1698 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 330 1698 - -
Lele36g0110 1698 Pfam Plus-3 domain 780 883 IPR004343 GO:0003677
Lele36g0110 1698 ProSiteProfiles GYF domain profile. 1121 1175 IPR003169 GO:0005515
Lele36g0110 1698 SMART swib_2 648 719 IPR019835 -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1627 1643 - -
Lele36g0110 1698 ProSiteProfiles Plus3 domain profile. 775 908 IPR004343 GO:0003677
Lele36g0110 1698 SUPERFAMILY SWIB/MDM2 domain 638 715 IPR036885 -
Lele36g0110 1698 SUPERFAMILY FYVE/PHD zinc finger 414 468 IPR011011 -
Lele36g0110 1698 Pfam GYF domain 1124 1165 IPR003169 GO:0005515
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1622 1670 - -
Lele36g0110 1698 Gene3D - 777 905 IPR036128 GO:0003677
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1465 1483 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1432 1511 - -
Lele36g0110 1698 SUPERFAMILY Plus3-like 776 905 IPR036128 GO:0003677
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1268 1314 - -
Lele36g0110 1698 Gene3D - 1122 1181 IPR035445 -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1491 1505 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 1221 1256 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 27 50 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 380 400 - -
Lele36g0110 1698 Gene3D SWIB/MDM2 domain 628 724 IPR036885 -
Lele36g0110 1698 CDD SWIB-MDM2_like 639 714 - -
Lele36g0110 1698 FunFam Zinc finger CCCH domain-containing protein 19 408 507 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 578 616 - -
Lele36g0110 1698 Coils Coil 341 361 - -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 968 989 - -
Lele36g0110 1698 CDD GYF 1121 1174 IPR003169 GO:0005515
Lele36g0110 1698 ProSiteProfiles Zinc finger PHD-type profile. 415 481 IPR019787 -
Lele36g0110 1698 FunFam Zinc finger CCCH domain-containing protein 19 627 721 - -
Lele36g0110 1698 ProSiteProfiles SWIB/MDM2 domain profile. 633 716 IPR003121 -
Lele36g0110 1698 FunFam Zinc finger CCCH domain-containing protein 19 1123 1180 - -
Lele36g0110 1698 ProSitePatterns Zinc finger PHD-type signature. 418 478 IPR019786 -
Lele36g0110 1698 SMART PHD_3 417 463 IPR001965 -
Lele36g0110 1698 MobiDBLite consensus disorder prediction 721 769 - -
Lele36g0110 1698 Pfam SWIB/MDM2 domain 641 714 IPR003121 -
Lele36g0110 1698 CDD PHD5_NSD 417 462 - -
Lele36g0110 1698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 509 IPR013083 -
Lele36g0110 1698 SMART rtf1 775 885 IPR004343 GO:0003677
Lele36g0110 1698 Coils Coil 156 176 - -
Lele36g0110 1698 Coils Coil 124 144 - -
Lele36g0110 1698 FunFam Zinc finger CCCH domain-containing protein 19 776 905 - -
Lele36g0110 1698 ProSiteProfiles Zinc finger C3H1-type profile. 1673 1698 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0110 Lele-ChrLele36 653200 662259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0110 370 486 PHD Transcription Factor Family AT5G58610 28.125 8.66e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele36g0110 Plus-3 5.9e-24 No_clan