Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g0068 ATGGCCTCTCCTGCTTCCTTTTACGAGTTGCTTGGGATTTCAATGGGGGCGAGTTGCCAAGAAATAAAGAGTGCCTACAGAAAGCTTGCAAGAACATGTCACCCTGATGTGGTGGCCATGAATCACAGGGCCAAGTCAGCCAACGAGTTCATGAAGATCCACTCGGCCTATTCAACTCTGTCAGACCCTGATAAGCGTGCTCAATATGACAGACAAATTTGCAGGTACAAAAAATCTCTCGAGTACTCATCTCTGCCCTGGCGAAATATGGAGTCCATGTCAGGTTATCATCAAAGATTTGGCCAAGCTGGACATAAATGGGAGACGGATCAGTGTTGAAAATCCTCAAACAAGGTTGGGGCTCAGAATAACGCGACCCCGTTTGGTGTACCGCCTCTTTGGCAAGGGGGGCCAAGAGCCAAAGCCAGAGAGAGAAACGAGATCCGAGTGGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGTGACCAAAAGGGTTTTGGCTTCATAACTCCTGACGATGGCGGCGAGGACCTCTTCGTCCACCAATCTGCGATCCGGGCGGAAGGGTTTCGTAGTCTCGGCGATGGAGAGTCTGTCGAGTTTCTGATCGAGTCGGACCCCGATGGCCGTACGAAGGCTGTCGACGTCACCGGCCCTGATGGGTCCGATGTTCAGGGAAGCCGACGAGGTGGAGGAGGTGCTGGAGGAAACAGATCCTACGGGAGCGGCCGTGGCGGTGGTTACGGAGGTGGCTACGGTGCTGGCGGCGGATATGGTGGTAGTCGTGGTGGAAGAGGCGGTGGCGGTGGTGGTTATGGCGGGGGTGGCGGTGGAGGTGGTTGTTATAACTGCGGTGAGGTCGGTCACCTGGCCAGGGATTGCTACCAGGGAAGCGGTGGAGGTGGCGGAGGCAGGTACGGCGGAGGCGGCGGTGGAGGTGGAGGGTGTTACACCTGTGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 1014 0.5651 MASPASFYELLGISMGASCQEIKSAYRKLARTCHPDVVAMNHRAKSANEFMKIHSAYSTLSDPDKRAQYDRQICRYKKSLEYSSLPWRNMESMSGYHQRFGQAGHKWETDQCXKSSNKVGAQNNATPFGVPPLWQGGPRAKARERNEIRVEMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRAEGFRSLGDGESVEFLIESDPDGRTKAVDVTGPDGSDVQGSRRGGGGAGGNRSYGSGRGGGYGGGYGAGGGYGGSRGGRGGGGGGYGGGGGGGGCYNCGEVGHLARDCYQGSGGGGGGRYGGGGGGGGGCYTCGESGHFARDCPTGAR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g0068 337 Pfam Zinc knuckle 283 297 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 Pfam Zinc knuckle 318 333 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 PRINTS Cold shock protein signature 158 173 IPR002059 GO:0003676
Lele36g0068 337 PRINTS Cold shock protein signature 179 188 IPR002059 GO:0003676
Lele36g0068 337 PRINTS Cold shock protein signature 194 212 IPR002059 GO:0003676
Lele36g0068 337 ProSiteProfiles Zinc finger CCHC-type profile. 319 333 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 Pfam 'Cold-shock' DNA-binding domain 157 221 IPR002059 GO:0003676
Lele36g0068 337 ProSitePatterns Cold-shock (CSD) domain signature. 169 188 IPR019844 -
Lele36g0068 337 Pfam DnaJ domain 7 70 IPR001623 -
Lele36g0068 337 MobiDBLite consensus disorder prediction 116 138 - -
Lele36g0068 337 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Lele36g0068 337 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lele36g0068 337 PRINTS DnaJ domain signature 45 65 IPR001623 -
Lele36g0068 337 PRINTS DnaJ domain signature 26 41 IPR001623 -
Lele36g0068 337 SMART c2hcfinal6 283 299 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 SMART c2hcfinal6 318 334 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 Gene3D DnaJ domain 1 91 IPR036869 -
Lele36g0068 337 CDD DnaJ 7 62 IPR001623 -
Lele36g0068 337 Gene3D - 280 306 - -
Lele36g0068 337 Gene3D - 315 337 - -
Lele36g0068 337 SUPERFAMILY Nucleic acid-binding proteins 151 221 IPR012340 -
Lele36g0068 337 PANTHER COLD SHOCK DOMAIN PROTEIN 2 153 334 - -
Lele36g0068 337 ProSiteProfiles Cold-shock (CSD) domain profile. 155 221 IPR002059 GO:0003676
Lele36g0068 337 SMART dnaj_3 5 65 IPR001623 -
Lele36g0068 337 SUPERFAMILY Chaperone J-domain 4 76 IPR036869 -
Lele36g0068 337 CDD CSP_CDS 156 221 IPR002059 GO:0003676
Lele36g0068 337 Gene3D - 150 233 IPR012340 -
Lele36g0068 337 MobiDBLite consensus disorder prediction 210 243 - -
Lele36g0068 337 ProSiteProfiles Zinc finger CCHC-type profile. 284 297 IPR001878 GO:0003676|GO:0008270
Lele36g0068 337 SUPERFAMILY Retrovirus zinc finger-like domains 274 335 IPR036875 GO:0003676|GO:0008270
Lele36g0068 337 SMART csp_8 157 222 IPR011129 GO:0003676
Lele36g0068 337 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g0068 Lele-ChrLele36 445257 447318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g0068 8 70 C2H2 Transcription Factor Family AT1G74250 43.939 4.59e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele36g0068 CSD 6.7e-25 CL0021