LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele36g0001	ATGGGGATTTGCTGGGGTTCTCCAGCTGACAACCCAAGCACCACAAGCACATCTGATCATCTTAGTGCAGCTACAACAGGTGCATCCCGGACTACCAGCAATACTACTACTGCTACTACGTCTTATGGGAGTGAAAGCATCTCCATTAATAGCCAGTTTTCCAAGTCCAGTGGCGGTGAAGCTTATCCGAATGGGCAGATTTTGCCTACTGCAAATTTAAGGATATTCACTTTTGCGGAATTGAAGGCTGCAACTAAGAATTTTAGAGTTGATACAGTACTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAAAAGGCAACGCCAAAAAATGGAAGTGGAACAGTCGTTGCTGTTAAAAAATTAAACTCAGAGAGCTTACAAGGATTTGAGGAATGGCAGTCGGAAATAAATTTTCTGGGACGGCTTTCTCATCCTAACCTCGTTAAGCTGTTAGGATACTGTTGGGAAGAAAATGAGCTTCTTCTCGTCTATGAATTCATGCAAAAGGGCAGTTTGGAGAATCACCTATTTGGAACTAACATTCTTTCGCTTTTGCAAGGGGGTTCTGCTGTTCAACCACTTCCATGGGACATAAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCTTGTCATTCTTGCACACATCTGAGAAAGTAATTTACCGTGATTTCAAGGCCTCCAATATATTGCTCGATGGGTCTTATACTGCAAAGATTTCGGACTTCGGCTTGGCAAAATTGGCACCTTCAGCTAGTCGGTCCCATGTAACAACAAGGGTGATGGGCACGTTCGGCTATGCGGCTCCTGAGTATGTGGCAACAGGGCATCTGTACGTGAAGAGTGACGTGTATGGATTTGGTGTTGTTTTGGTTGAGATGCTGACAGCCCTTCGGGCACTAGATCAAAACCGCCCCAGCGGCCAACATAATCTTGTGGACTGGGTGAAACCATACTTACAAGATGGAAGAAAATTGAAGAGCATAATGGATTCACGGTTGGAGGGAAAATATCCATCCAAATCTGCATTTCGTATAGCTCAACTTGCTTTAAAATGTCTTGCATTAGAGCCTAAAAATCGGCCATCAATGAAGGAAGTTTTGGAGAACTTGGAGCGGATTCAAGCTGCCAATGACATGCATGTGGAGCCTAGGCACCGTTCTACACGTAACGTGGCTCCCCATCATGTTTCCCGACCTCAGCGCCCTCGATCTCACTGA	1233	0.4526	MGICWGSPADNPSTTSTSDHLSAATTGASRTTSNTTTATTSYGSESISINSQFSKSSGGEAYPNGQILPTANLRIFTFAELKAATKNFRVDTVLGEGGFGKVFKGWLEEKATPKNGSGTVVAVKKLNSESLQGFEEWQSEINFLGRLSHPNLVKLLGYCWEENELLLVYEFMQKGSLENHLFGTNILSLLQGGSAVQPLPWDIRLKIAIGAARGLSFLHTSEKVIYRDFKASNILLDGSYTAKISDFGLAKLAPSASRSHVTTRVMGTFGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTALRALDQNRPSGQHNLVDWVKPYLQDGRKLKSIMDSRLEGKYPSKSAFRIAQLALKCLALEPKNRPSMKEVLENLERIQAANDMHVEPRHRSTRNVAPHHVSRPQRPRSH	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele36g0001	410	ProSitePatterns	Protein kinases ATP-binding region signature.	94	125	IPR017441	GO:0005524
	Lele36g0001	410	ProSiteProfiles	Protein kinase domain profile.	88	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele36g0001	410	FunFam	Serine/threonine-protein kinase BIK1	55	171	-	-
	Lele36g0001	410	Gene3D	Transferase(Phosphotransferase) domain 1	172	399	-	-
	Lele36g0001	410	SUPERFAMILY	Protein kinase-like (PK-like)	68	377	IPR011009	-
	Lele36g0001	410	MobiDBLite	consensus disorder prediction	1	41	-	-
	Lele36g0001	410	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	172	389	-	-
	Lele36g0001	410	MobiDBLite	consensus disorder prediction	382	410	-	-
	Lele36g0001	410	CDD	STKc_IRAK	94	378	-	-
	Lele36g0001	410	MobiDBLite	consensus disorder prediction	395	410	-	-
	Lele36g0001	410	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Lele36g0001	410	Pfam	Protein tyrosine and serine/threonine kinase	90	375	IPR001245	GO:0004672\|GO:0006468
	Lele36g0001	410	MobiDBLite	consensus disorder prediction	8	41	-	-
	Lele36g0001	410	PANTHER	OS01G0588500 PROTEIN-RELATED	35	379	-	-
	Lele36g0001	410	Gene3D	Phosphorylase Kinase; domain 1	72	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele36g0001	Lele-ChrLele36	15228	19090	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele36g0001	71	379	Receptor kinase-like Gene Family	AT4G02010	50.479	5.55e-100	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele36g0001		PK_Tyr_Ser-Thr	8.9e-48	CL0016