Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1438 ATGGAGGATTACGCGGCTTTAGGAGGTGGAGCATCTGTTAATATCGGAAGGGAAGAAGAAGAAGAAGAAGATGAATTTTGCAGTTGTTGTGAAGACGAAGAAGAAGAATTATGGAAAGAATCTGAGCAGTCGCGGGTGGAAAAGTTGAAGGAGTACTGTGATGAATCTTCCGTAAAAATGTTCTTCAAGGGCTTGTCTATAGCTGGGGTTGAAAATTCCACTTCTGGGTATTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTCTTCCAGCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCAGAAAAGCTATTAGCTGAATACTTGGCTCTCATTGATGGCTTGCTGGAGGCTATGCAGAATAACATTCACCGGGTTTACGCTTTTACAGATTCTGAGTTATTGTACGATCAGATAACATTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAAAGGGTTCTGGAGCATGCCAATAATTTTGAATCATTTGTTCTTAATCTTGTTCCTAGCATTGATCTTGAGAAACCGCTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTGCTTGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCAATAATGGTCACCATGAAATGTTCTCACAAGTTTTGTTCACATTGTTTGAGGGCTTATGTTGATGGAAAGGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAGCCAAGATGCAAATATTACATCTCTATTCCAGAATGCAGGTCTTTTCTTCCGTTTACCTCTTTTGAGTCTTTGGAGAAAGCCCTTGTAGAAGCAGATGTTTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAGCTAGGGCTAGTTCATCTAGCCAATCAGGCAATTCTTGTGCCGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGCGTACCAGAATTTACCTGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGCTTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTTACTCAAGGTTGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCGGAATACAGGGAGGGCCAACAGACTTGTCAGTGCGTGTTTTGGGATGAAGACAACTCTGAAGGCTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCCCTCCCCATGATCATGGATGCATACTCAGACCAAGAACGTTCCCAGCTTGCACTTATTCAACGATTCCTTGCCGGGGGTTTCAGTCTGAGTGACCATCATCCTTACCAATCCCCTCCCCGTTGCACAGACTCCTACGTTGACGCCATGAAGGATCTACATCAGCTTCCATGGCTCGAGCGATTCGTCTCCGTGATAAGCGACAACTACTATGAAGACTATATTCAGTAA 1557 0.4342 MEDYAALGGGASVNIGREEEEEEDEFCSCCEDEEEELWKESEQSRVEKLKEYCDESSVKMFFKGLSIAGVENSTSGYSGIGVVMERPSGLPAIQVQKKLDFYAEKLLAEYLALIDGLLEAMQNNIHRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLEHANNFESFVLNLVPSIDLEKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLPIMVTMKCSHKFCSHCLRAYVDGKVQSCQVPIRCPQPRCKYYISIPECRSFLPFTSFESLEKALVEADVSDRIYCPFPNCSVLLDPRECLSARASSSSQSGNSCAECPVCQRFICVDCEVPWHSSMSCEAYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCVFWDEDNSEGSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1438 518 SMART ibrneu5 273 343 IPR002867 -
Lele35g1438 518 SMART ibrneu5 353 412 IPR002867 -
Lele35g1438 518 Pfam IBR domain, a half RING-finger domain 276 343 IPR002867 -
Lele35g1438 518 Pfam IBR domain, a half RING-finger domain 363 412 IPR002867 -
Lele35g1438 518 FunFam RBR-type E3 ubiquitin transferase 201 286 - -
Lele35g1438 518 Gene3D - 341 495 - -
Lele35g1438 518 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 465 IPR031127 GO:0004842|GO:0016567
Lele35g1438 518 ProSiteProfiles TRIAD supradomain profile. 202 418 IPR044066 -
Lele35g1438 518 FunFam RBR-type E3 ubiquitin transferase 341 466 - -
Lele35g1438 518 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Lele35g1438 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 286 IPR013083 -
Lele35g1438 518 FunFam RBR-type E3 ubiquitin transferase 58 193 - -
Lele35g1438 518 SUPERFAMILY RING/U-box 356 420 - -
Lele35g1438 518 Gene3D - 58 192 IPR036397 GO:0003676
Lele35g1438 518 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Lele35g1438 518 Pfam Reverse transcriptase-like 69 175 IPR002156 GO:0003676|GO:0004523
Lele35g1438 518 SUPERFAMILY Ribonuclease H-like 74 175 IPR012337 -
Lele35g1438 518 SUPERFAMILY RING/U-box 204 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1438 Lele-ChrLele35 20135011 20138460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1438 57 403 C3H Transcription Factor Family AT2G19610 27.348 3.90e-30 120