Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1433 ATGTTCCATATAGTTTTCAATGGCTGCCGCAAGGTTAGAGTCAAAGACGTCAAGGTGTTAGCCCCTGAAAACAGCCCCAACACAGACGGCATTCACGTTCAGTTGTCATCCGACGTCAACATCCTCCACTCCGAAATTCGCACCGGCGACGACTGTGTTTCTGTCGGACCAGGCACCTCAGACGTTAGGATTGAACACGTAGCTTGTGGAACAGGTCACGGAATTAGCATAGGAAGTTTAGCGAGGGAGATGGAGGAACCTGGGGTGCAAAGAGTGACAGTTAAAGCGGTTAACCTGACAGCTCAAAGCATCCTTGCAACTCGATTAAGCTGGAGGATGTCAACCTCACTTACAACGAGCAAGAAGCTCAGGCTTTCTGCCACAACGCCGCCGGCACCGCCTCCTCTTGGGTCCGCCCGGAAAGCTGCTTGTAGTGGCAAATGTGCTTGGAGCTATTTGTTAGACACTGTTCTCCAGAACGATATCGATTTACTGAATCCTCCGGTCGAGATCGAAAAGAGGAAGCACAAGCTTAAACGTCTTGTTCAGTCTCCAAATTCGTTCTTCATGGATGTCAAATGTCAAGGTTGCTTCAATATAACCACTGTATTTAGCCACTCGCAAACAGTTGTTGTTTGCGGGAATTGCCAGACCGTGTTGTGCCAGCCTACTGGTGGCCGAGCACGGTTAACAGAAGGATGCTCTTTTAGAAAGAAGGGAGATTAG 726 0.4917 MFHIVFNGCRKVRVKDVKVLAPENSPNTDGIHVQLSSDVNILHSEIRTGDDCVSVGPGTSDVRIEHVACGTGHGISIGSLAREMEEPGVQRVTVKAVNLTAQSILATRLSWRMSTSLTTSKKLRLSATTPPAPPPLGSARKAACSGKCAWSYLLDTVLQNDIDLLNPPVEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1433 241 Gene3D - 160 240 IPR023407 -
Lele35g1433 241 SUPERFAMILY Pectin lyase-like 1 100 IPR011050 -
Lele35g1433 241 Pfam Glycosyl hydrolases family 28 2 100 IPR000743 GO:0004650|GO:0005975
Lele35g1433 241 FunFam 40S ribosomal protein S27 156 241 - -
Lele35g1433 241 ProSitePatterns Ribosomal protein S27e signature. 193 225 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele35g1433 241 Hamap 30S ribosomal protein S27e [rps27e]. 179 239 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele35g1433 241 Gene3D - 1 119 IPR012334 -
Lele35g1433 241 PANTHER 40S RIBOSOMAL PROTEIN S27 148 241 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele35g1433 241 SUPERFAMILY Zn-binding ribosomal proteins 185 239 IPR011332 GO:0006412
Lele35g1433 241 Pfam Ribosomal protein S27 185 239 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele35g1433 241 ProSitePatterns Polygalacturonase active site. 66 79 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1433 Lele-ChrLele35 20102411 20105546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1433 157 241 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 92.941 9.89e-57 174