Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1427 ATGCAGAAGACTTGCACCATTTGCTTAGGTGACTTGAAGACAGGGCAAGGCCGAGCCATCTTTGTTGCTGAGTGTGCTCATTCCTTCCATTTCAATTGTATCGCTTCCAATGTCAGGCATGGCAGCCATGTCTGTCCCATCTGTCGTGCCAAATGGAAAGAAATCCCATATCAAGCTCCAAGCAATTTCCCTCCTCCTTCTCCTCCCCTCCTGGTCAGGAACAGGCTCAGACCACTGGCTTCTTCACCACCTCGTCGATTAAATCCCTCAGCTATCATCGAGCCTCTTCGCTTCTCTGATGATGAGCCACTCCCTGTTCCAGCAACCTCTGCAGAAGAACATGTTTCATCTGCACCTAATGTTGTGACTATCAAGTCCTTCACCGAGTATCCTGTCCTCTCTGCATCTGAAGCTCATCCAGATTTTGCTGTTCTTGCCAACATCCGTGCACCGGCGCTTTCTCAACGTGATCATGCACCTGTGGACCTTGTTGCGGTGCTTGACATCAGTGACAGTATGGCTGGTTCAAAGCTGACACTTCTCAAACAGGCTGTTCTTTTTATCATTCAGAATTTGGGTGCTTCTGACAGACTTTCTATAGTTGTTTTCTCCTCCACTGCTCTCAGGATTTTCCCACTTCGTAGGATGACTAATAGTGGCCAATCTGATGCAACCGTTGCCGTCAATTCTCTTTCAACAGATGGCGGAACTGACATTCTGAGTGGCCTCAAAAAAGGAGCTCGTGTACTCGAGGAACGGCGAGAGCGAAACCCTGTTCCCAGCATTATGCTCCTCTCTGATGGCAGGTCTCAACCTTTTATAATTCCTCCATTGGGACCCCAATTGCATGCTTCCATCACCTCCAATAATCATAATTCAAATGGGGATTCTATTCCTGTCCACACTTTTGGCTTTGGTAGGGATCATGATTCCACTGCATTGCACGCCATCTCTGACGCATCTGGTGGCACCTTTTCCTTCATTGAATCTGTGGGCATGTTGCAAGATGCTTTTGCAAGGTGCATTGGGGGTCTACTCAGTGTTGTGGCTCAAGAGGTACAACTTATCTTCAAAACAATATCACCAGGCCTGCAAATCAATTCAGTACGCTCAGGGAGATACATCAGTGAAATTCGCGATTCTGGTAGGCTATGTGTCATCAATGTCGGTAACATGTATGCAGATGAGGAAAAGGGATTTCTGTTGTACCTATCAATTCCTCCAATCCCAGCCATTGAAAGAGACAACAATATGGAGACACAGACTCCTTTACTGAATGTTAAATGCCAATACAAAGACTCAACCTCTGAGGAAGAGCTAGTTAAGGTTAGCGGTGAGAGAGTAGACATTAGAAGAAGATCAAATGGTTCACCAGAGCCTAATGAAATGACAGTGTCCTTGGAGGTTGACAGACATAAAAATAGACTCATGGTGGCTGATGGGATCTCCGAAGCACGAAGGCTGGCAGAGAGAGGAGACCTGCGAGGCGCGAAATCTTTGCTGGAAGCGAAAAGATCGGTACTATTGTCCTCAGCCTCAGCATCAGCAGGGGATCTTACTTGCACTTGGCTTGATGCTGAACTTAGAGAAACTAAGGAGAGAATGGAAAGCAGGGAAAGATATGAACATACAGGAAGGGCTTATGTTCTGTCAGGATTAAGTTCACATTCATGGCAGAGATCTACGACCAGAGGAGACTCTTTAACTCAGTCATTTGTAAGTGGCCATGTCAGAGATACTTCGGGAAGCGGGTCGATCGGGTACGACACACCTTCAATGGTTAACATGGTGAGAATGTCACAGAATCTTAGTCTGAGTGGATCTTGGTCTCTCCCTGAACCTTGA 1845 0.4667 MQKTCTICLGDLKTGQGRAIFVAECAHSFHFNCIASNVRHGSHVCPICRAKWKEIPYQAPSNFPPPSPPLLVRNRLRPLASSPPRRLNPSAIIEPLRFSDDEPLPVPATSAEEHVSSAPNVVTIKSFTEYPVLSASEAHPDFAVLANIRAPALSQRDHAPVDLVAVLDISDSMAGSKLTLLKQAVLFIIQNLGASDRLSIVVFSSTALRIFPLRRMTNSGQSDATVAVNSLSTDGGTDILSGLKKGARVLEERRERNPVPSIMLLSDGRSQPFIIPPLGPQLHASITSNNHNSNGDSIPVHTFGFGRDHDSTALHAISDASGGTFSFIESVGMLQDAFARCIGGLLSVVAQEVQLIFKTISPGLQINSVRSGRYISEIRDSGRLCVINVGNMYADEEKGFLLYLSIPPIPAIERDNNMETQTPLLNVKCQYKDSTSEEELVKVSGERVDIRRRSNGSPEPNEMTVSLEVDRHKNRLMVADGISEARRLAERGDLRGAKSLLEAKRSVLLSSASASAGDLTCTWLDAELRETKERMESRERYEHTGRAYVLSGLSSHSWQRSTTRGDSLTQSFVSGHVRDTSGSGSIGYDTPSMVNMVRMSQNLSLSGSWSLPEP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1427 614 CDD RING-H2 5 49 - -
Lele35g1427 614 Gene3D von Willebrand factor, type A domain 162 343 IPR036465 -
Lele35g1427 614 SUPERFAMILY vWA-like 158 342 IPR036465 -
Lele35g1427 614 ProSiteProfiles Zinc finger RING-type profile. 5 49 IPR001841 -
Lele35g1427 614 SMART ring_2 5 48 IPR001841 -
Lele35g1427 614 Pfam RING-like zinc finger 5 34 IPR001841 -
Lele35g1427 614 ProSiteProfiles VWFA domain profile. 162 349 IPR002035 -
Lele35g1427 614 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 602 - -
Lele35g1427 614 SMART VWA_4 160 340 IPR002035 -
Lele35g1427 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Lele35g1427 614 Pfam VWA / Hh protein intein-like 520 601 IPR032838 -
Lele35g1427 614 Pfam von Willebrand factor type A domain 162 338 IPR002035 -
Lele35g1427 614 SUPERFAMILY RING/U-box 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1427 Lele-ChrLele35 20067042 20068886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1427 5 54 C3H Transcription Factor Family AT1G74410 48.077 1.40e-06 48.1