Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1416 ATGAGCAGCTGTGAATGTTCAGGGGAGGACAGTGAGGTGAGAGTGGTTTTTCTCCCATTTCTGTTGGAGCCCGTCTGTCTCGCATCGTCGAGTTTTCGTTTCTCTCCGAAGCAGAAGAAGATTTCAAGCTCTGTGAGGATTTGGGCTGTCTTGCACGTGAATTTGGAAACTATGACTTCATCTGATCATGACCTCATCGATAACGAAGCTAATGAGCAGCAACAGCAATCAAACTCAGAGATGCAGTCTTCACCTACAAATGGAATTTCTGATTTAGGTATTGCGGCCCAGAATGTCCAGTATGCAGTGCCTCCTCCACAGATTGGAACTGGACATGCTATGGCACCGGTTTATCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACGCAACCTTATCCCCCACAACCCTATGGAACACAACCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCCACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAAGAATCGCAAGCCATACTTGCATGAATCCCGGCATTTGCATGCACTGAGAAGAGCACGAGGATGCGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGACGACCAACAGAATGAGGTGTCATCAACAGATAATTCACCGTCCAATACCAATCTCAATCCTGACCAAAATGATATTGCTTCCCCAGATAGGATTTCCTAA 792 0.447 MSSCECSGEDSEVRVVFLPFLLEPVCLASSSFRFSPKQKKISSSVRIWAVLHVNLETMTSSDHDLIDNEANEQQQQSNSEMQSSPTNGISDLGIAAQNVQYAVPPPQIGTGHAMAPVYPYPDPYYRSIFAPYETQPYPPQPYGTQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIKNRKPYLHESRHLHALRRARGCGGRFLNSKKSDDQQNEVSSTDNSPSNTNLNPDQNDIASPDRIS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1416 263 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 64 248 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 Gene3D - 167 228 - -
Lele35g1416 263 MobiDBLite consensus disorder prediction 227 257 - -
Lele35g1416 263 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 MobiDBLite consensus disorder prediction 70 89 - -
Lele35g1416 263 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Lele35g1416 263 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Lele35g1416 263 MobiDBLite consensus disorder prediction 222 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1416 Lele-ChrLele35 19965286 19970051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1416 58 258 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.128 2.29e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele35g1416 CBFB_NFYA 6.2e-26 No_clan