Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1376 ATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTTGCTTTGGCTACTTCATTAGGAGAAGTTGAATATGATCCTAATGTTAATAATAAAGATGATATAATCAGTGCAATCGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATAACTTTATCAGTTCTTGGTGTATACAGCCTGATTGATGCACAAGTCTTAGAAGGCATTCTCAGCAACATGAAAGGAGTAAGGCAGTTTCGTTTTGACCAGATATCAAGTGAACTGGTGGTTCTTTTTGATCCTGAAGTTTTCAGTTCTAGATCCTTAGTTGATGAGATTGAAAGGGGAAGTAATGGCAAGTTTAAATTACATGTTAGAAGCCCATATACAAGACTGGCTTCCAAAGATGTTGAGGAGACCTCGGCTATGTTTTGGCTTTTTATATCCAGCCTATCTCTTAGTGTGAGTGTTTCTTCGTTTTATATTCCTCTCTTCTTCATGCGTGTAGTTTGTCCTCATGTACCCATGTTATATTCATTATTACTTTGGAGATGTGGACCTTTCCTCATGGCCGATTGGTTGAAGTGGGCTTTGGTGAGTATGATTCAATTTGTAATTGGGAAGCGCTTCTACATTGCAGCTGGCCGTGCTCTCAGAAATGGTTCCACTAACATGGATGTCTTGGTTGCATTGGGAACTACAGCATCTTATGTTTATTCTGTTTGTGCTCTACTGTATGGCGCTCTAACTGGGTTTTGGTCTCCGACATATTTTGAGACCAGTGCCATGCTCATAACATTTGTATTGTTGGGTAAGTACTTGGAATGCCTTGCCAAGGGAAAGACATCAGATGCCATCAAGAAGTTGGTAGAACTTACTCCTTCAACAGCGTTATTGGTTGTCAAAGATAAAGGTGGAAGATCTATTGAAGAGAGGGAAATAGATTCTTTGCTCATTCAACCTGGTGACACATTAAAAGTTGTCCCTGGTGCAAAGGTTCCTGCTGATGGAATTGTAACATGGGGCTCAAGTTACATAAATGAGAGCATGGTAACCGGTGAATCTGTACCTGTTTTGAAGGAGGTGAATGCAACTGTTATTGGAGGTACAATAAATTTACATGGCATCCTTTTAATTGAAGCTACCAAAGTAGGATCTGATGCAGTCTTGAGTCAGATAATTAGCTTGGTTGAGACAGCTCAGATGTCCAAGGCCCCCATTCAGAAATTTGCTGATTATGTAGCAAGTATATTTGTTCCCACAGTTGTTGCCTTGGCCCTATTGACATTTTTGAGTTGGTATATTGCTGGGGGTCTTGGAGCTTACCCTGAAGGATGGTTGCCAGAAAATGGGAATCATTTTGTTTTTGCCCTTATGTTTTCAATATCTGTAGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCAGTCATGGTAGCTACAGGGGTTGGGGCTAACAATGGGGTGTTGATCAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTACGTGATATTTGATAAAACTGGCACTTTAACTCAGGGAAAAGCTAGCTTTACCACTGCCAAGGTATTCACAGGAATGGATCGTGGGGAATTTCTAAAATTGGTGGCTTCTTCTGAGGCTAGCAGTGAACACCCGCTGGCTAAAGCAATAGTAGCATATGCACGTCATTTTCATTTCTTTGATGAATCCTCTGCAACTACTGGTATCAAAGATGATGCCAGTGAGTTGAACTTTGGGTGGCTTTATGATGTCTCTGACTTCTTGGCTCTTCCAGGAAGAGGTGTTCAGTGTTTCATAGATGGGAAGCGTATATTGGTTGGTAATAGGAAACTAATGGAGGAAAGTGGCATAGATATTCCAACTGAAGTGGAAAATTTTGTGGTCGAGCTGGAAGAAAGTGCAAAGACAGGGATTCTGGTTGCATGTGGTGATGAGCTAACTGGAGTTATAGGGGTTGCAGACCCACTGAAGAGAGAGGCTCCTGTGGTTATTGAGGGCCTCAAGAAAATGGGTGTCAGACCTATTATGGTTACAGGAGATAACTGGAGAACAGCTCAAGCTGTTGCCAAGGAGGTTGGCATTGAAGATGTTAAGGCTGAGGTTCTGCCTGCAGGGAAGGCTGATGTTGTCCGGTCATTCCAGAAAGATGGAAGCTTAGTTGCAATGGTGGGCGATGGCATCAACGACTCTCCCGCGTTAGCTGCCGCAGATGTCGGTATCGCCATTGGGGCAGGGACCGATGTTGCGATAGAAGCGGCTGATTTTGTGTTGATGAGAAATAATTTGGAAGATGTAATCACCGCCATTGATCTCTCTAGGACAACCTTCTCTCGTATTCGGTTGAACTATTTCTTTGCAATGGCCTACAACGCGGTTGCCATACCAGTTGCTGCTGGGGTTCTCTATCCTTCACTGAGGATCAAGCTGCCTCCATGGGTCGCTGGCACATGCATGGCTCTCTCATCTGTAAGTGTGGTATGTTCTTCTTTGCTTCTCAGGAGATATAGAAGACCTAAACTTGCTGAAATACTCGAAATAATTGTAGATTAG 2607 0.4308 MTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPNVNNKDDIISAIEDAGFEASFVQSSEQDKITLSVLGVYSLIDAQVLEGILSNMKGVRQFRFDQISSELVVLFDPEVFSSRSLVDEIERGSNGKFKLHVRSPYTRLASKDVEETSAMFWLFISSLSLSVSVSSFYIPLFFMRVVCPHVPMLYSLLLWRCGPFLMADWLKWALVSMIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPSTALLVVKDKGGRSIEEREIDSLLIQPGDTLKVVPGAKVPADGIVTWGSSYINESMVTGESVPVLKEVNATVIGGTINLHGILLIEATKVGSDAVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTFLSWYIAGGLGAYPEGWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASFTTAKVFTGMDRGEFLKLVASSEASSEHPLAKAIVAYARHFHFFDESSATTGIKDDASELNFGWLYDVSDFLALPGRGVQCFIDGKRILVGNRKLMEESGIDIPTEVENFVVELEESAKTGILVACGDELTGVIGVADPLKREAPVVIEGLKKMGVRPIMVTGDNWRTAQAVAKEVGIEDVKAEVLPAGKADVVRSFQKDGSLVAMVGDGINDSPALAAADVGIAIGAGTDVAIEAADFVLMRNNLEDVITAIDLSRTTFSRIRLNYFFAMAYNAVAIPVAAGVLYPSLRIKLPPWVAGTCMALSSVSVVCSSLLLRRYRRPKLAEILEIIVD 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1376 868 SUPERFAMILY Calcium ATPase, transmembrane domain M 256 816 IPR023298 -
Lele35g1376 868 SUPERFAMILY Calcium ATPase, transduction domain A 322 408 IPR008250 -
Lele35g1376 868 ProSitePatterns E1-E2 ATPases phosphorylation site. 524 530 IPR018303 -
Lele35g1376 868 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 642 822 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele35g1376 868 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 275 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele35g1376 868 CDD P-type_ATPase_Cu-like 171 838 - -
Lele35g1376 868 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 863 - -
Lele35g1376 868 FunFam Copper-exporting P-type ATPase 622 673 - -
Lele35g1376 868 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 236 851 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele35g1376 868 FunFam Copper-transporting ATPase RAN1 529 621 - -
Lele35g1376 868 Pfam haloacid dehalogenase-like hydrolase 518 756 - -
Lele35g1376 868 Pfam E1-E2 ATPase 303 501 - -
Lele35g1376 868 FunFam Copper-transporting ATPase 1, putative 290 412 - -
Lele35g1376 868 FunFam Probable copper-transporting ATPase HMA5 644 799 - -
Lele35g1376 868 Gene3D - 622 673 IPR023299 GO:0000166
Lele35g1376 868 Gene3D - 529 621 IPR023299 GO:0000166
Lele35g1376 868 CDD HMA 1 58 IPR006121 GO:0046872
Lele35g1376 868 SUPERFAMILY HAD-like 521 848 IPR036412 -
Lele35g1376 868 Gene3D - 290 412 - -
Lele35g1376 868 ProSiteProfiles Heavy-metal-associated domain profile. 67 125 IPR006121 GO:0046872
Lele35g1376 868 FunFam Copper-exporting P-type ATPase A 1 60 - -
Lele35g1376 868 Gene3D - 489 799 IPR023214 -
Lele35g1376 868 PRINTS Copper-transporting ATPase 1 signature 219 244 - -
Lele35g1376 868 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Lele35g1376 868 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Lele35g1376 868 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Lele35g1376 868 Gene3D - 1 65 - -
Lele35g1376 868 SFLD p-type atpase 504 793 IPR044492 -
Lele35g1376 868 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Lele35g1376 868 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872
Lele35g1376 868 SFLD C1.7: P-type atpase like 504 793 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 742 761 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 522 536 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 667 678 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 689 699 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 765 777 - -
Lele35g1376 868 PRINTS P-type cation-transporting ATPase superfamily signature 358 372 - -
Lele35g1376 868 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1376 Lele-ChrLele35 19666258 19670573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1376 1 868 Primary Pumps ATPases AT5G44790 76.382 0.0 1338