Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1346 ATGGGCGATCCGACTCATCTCGAGCAGATGGGCAGAGAACTCGACTGTCCCATATGTTGGAGTTTACTGGATTCTGCAGTTTCTCTTACGTGTAATCATGTATTCTGCAACTCTTGTATTGTGAAATCAATGAAATCAGGTTCAAGTTGCCCTGTGTGTAAAGTGCCCTTCCGGCGTAGAGAGATTCGCGCTGCTTCTCATATGGATAACTTGAAAAAAAAAGAGACCCACAAAAGGAAGGGATCAAGGAAAGAGACTGAGGCCAGCAAGAAGAATTCTGATGCTGACTCTGTAAAACCTACCTTTCCAACAAAGAAAAGGGTTCAGTTGCCACAAAGTCCTCTTTCAAAAACTCCATTTAAGAATGCAGGGCTTGGGCCTTCTCTAAGGGAAATTATCAAAGAGGGAAGAAAAGAGGGTTTGGCCACCTCAAGTGGGAGTCGTATCAGAAATGAGAAAGAAGTAGCTCTTTCACCCTTCTTTTGGTTAAGAGATGAAAAAGATGGAGAAAAGTCAAGTCAGAGTACCGTTGGGGATAACCTCAGCGATTCACCAACACCAAATCTTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAACCCTTCTAAAGCGACTCCATCAGATGATGTACAAGATAAAACTTTCGTTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCCCCTGAATTATGCTCAAGTCCCTTCAGGATGCAGGTTGAAGATCCCGGTGAGATTGATGAAAATCAAGTGAAGGGTTATGTACCTGACTCCCCGGACCTTGAAGCAAATCAATTAAGTGCTGAGAATATAAAATTTGAGAATTTGAAACAAGGAAATGATTTGAACACGATGACACCTGGAGTGGCTTCTCTTCAAAAGAATATGAGAAAGAGGAGCAGGAAGGCAACAGAAAAACCCCAGAAAGAGCAGACTGAAAAACATGGAGCCCCAGTTAATGGAACTGACTTCATTCCAGAGAGATTATCAACACCAACACCTCAAACTGCTCGGGCACCTTCTGATATATCTGAGATTATTAGTAACGGGGAAGCAAAGATGGTAAATGATTCACCAGCTTCACCATGTAAACAAGAACGTGAGAAGGATTATAATCTGAAAAATTCTAAGAAAAGCCAGAGGAAAAGGTATGGGAAAAAAAAGCAGGACAATTTACAAAAGATAGTCGAAGACTCATCTTCAATGCAAAACTGTAACAATGAGAATGCTGGTGGTCAATCGTCGACTTTAATTCTCCAGAAGGATAATAATGGAAACCCGTGCAGTAGCAGGCAAATAGAAATTAGTTCTGGCAGAAAATCCAAGTCCAGCAACAGAGAATTGAGGAATAATAAAAGGTTAAAAGTTTCATCTGATTGCATTTCCCAGCAGGCACATGGTGAAGAAACTCAGCCTACCAAGAGGATTCTTCAACACCCTGAAAGTGGGGCTTTAAGTGAATCATTACAAGAGAAACACCGTCCTCTGACTGGTGAAGTAGTTTTACGGAAATGTGAGACCCATATCAAGAAGTTCCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCAGATGGTGCATTACTATAAGGGCAAGCCTGTTGCTGCAGATCATGAAGGAGGATCAAAAGTCATACATTCTCACAAGAATTGCACTGAATGGGCCCCCAATGTATATTTTGAAGATGATATTGCAATTAATCTTGAAGCTGAAATAAGCAGAAGTCGAAGAATTAAATGTAGTTTCTGTGGACTTAAGGGGGCGGCACTAGGTTGTTTTGAAAAAAGTTGTCGCAGGAGCTTTCATGTTACTTGTGCCAAGTGTACTTCTCAGTGTCGATGGGATATGGATAACTTTGTCATCCTCTGTCCTCTTCACGCTTCTTTGAAGTTGCCTTGTGAACGTACAGGAACTCAAAACAGAAGCAACAAGTGCACAGCTAAGTAAAATCAGCGCAATAACACTGCTGGCAAGCATGACCCTGGCGTCCAAAATCTGAATGCTCGTTGGTCATATAAAAAAATTGTTGTCTGTTGTTCAGCTTTATCCGAACCAGAGAAGGATGTCGTTTCTGAATTTGAAAGAGTTACAAAGGTTACGGTTTTGAAAAAGTGGGATGCAAGTGTGACCCACGTGATAACATCGACAGATGAAAATGGGGCATGCAAAAGAACCCTCAAAGTGCTGCAGGGTATCCTCGAGGGAAAGTGGATTCTCAATGCGGAATGGATTAAAGCATCCATGCGAGCAATGGAACCTGTTGATGAGGAGCGTTATGAAATTACTGTTGACATCCATGGAATCCAGGATGGCACTCGTCTTGGAAGACTAAGAGTATTGAATAAGCAACCAAAGCTTTTTGATGGCAACAAGTTCTATTTTATGGTGGATTTTACGCCGTCATATAAGGGTTATTTACAGGACCTTGTCACGGCTGCTGGAGGGATCTTTCTGCACAGAAAACCATTATGTCGTGACCAAAAAGCATTATCACCTGATAGCCATCCATCCCAAACCTTCATAATTTACAGCCTCGAACTTCCTGATGAATTTGATCCCTTAAAAAGGGAAACAATTCTCAGTCAAAGGCAAAATGATACAGAGGCTTTGGCAAGTTCAGCTGGTTCAAAAGCAGCGAGTAATACATGGATTTTAGATTCTATATCAGCTTGCAGGATGCAAAACCTTGTTCAATAA 2727 0.4155 MGDPTHLEQMGRELDCPICWSLLDSAVSLTCNHVFCNSCIVKSMKSGSSCPVCKVPFRRREIRAASHMDNLKKKETHKRKGSRKETEASKKNSDADSVKPTFPTKKRVQLPQSPLSKTPFKNAGLGPSLREIIKEGRKEGLATSSGSRIRNEKEVALSPFFWLRDEKDGEKSSQSTVGDNLSDSPTPNLPSFSDLKDSDDENPSKATPSDDVQDKTFVDLFDSEMFEWTQRPCSPELCSSPFRMQVEDPGEIDENQVKGYVPDSPDLEANQLSAENIKFENLKQGNDLNTMTPGVASLQKNMRKRSRKATEKPQKEQTEKHGAPVNGTDFIPERLSTPTPQTARAPSDISEIISNGEAKMVNDSPASPCKQEREKDYNLKNSKKSQRKRYGKKKQDNLQKIVEDSSSMQNCNNENAGGQSSTLILQKDNNGNPCSSRQIEISSGRKSKSSNRELRNNKRLKVSSDCISQQAHGEETQPTKRILQHPESGALSESLQEKHRPLTGEVVLRKCETHIKKFQCAFCLSSEESEASGQMVHYYKGKPVAADHEGGSKVIHSHKNCTEWAPNVYFEDDIAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVTCAKCTSQCRWDMDNFVILCPLHASLKLPCERTGTQNRSNKCTAKXNQRNNTAGKHDPGVQNLNARWSYKKIVVCCSALSEPEKDVVSEFERVTKVTVLKKWDASVTHVITSTDENGACKRTLKVLQGILEGKWILNAEWIKASMRAMEPVDEERYEITVDIHGIQDGTRLGRLRVLNKQPKLFDGNKFYFMVDFTPSYKGYLQDLVTAAGGIFLHRKPLCRDQKALSPDSHPSQTFIIYSLELPDEFDPLKRETILSQRQNDTEALASSAGSKAASNTWILDSISACRMQNLVQ 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1346 908 MobiDBLite consensus disorder prediction 368 383 - -
Lele35g1346 908 Pfam PHD-like zinc-binding domain 558 636 - -
Lele35g1346 908 FunFam Breast cancer associated RING 1 514 639 - -
Lele35g1346 908 SUPERFAMILY BRCT domain 796 905 IPR036420 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 446 460 - -
Lele35g1346 908 FunFam Breast cancer type 1 susceptibility protein homolog 682 788 - -
Lele35g1346 908 Pfam Zinc finger, C3HC4 type (RING finger) 16 53 - -
Lele35g1346 908 SMART ring_2 16 53 IPR001841 -
Lele35g1346 908 SMART ring_2 590 636 IPR001841 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 461 477 - -
Lele35g1346 908 MobiDBLite consensus disorder prediction 332 349 - -
Lele35g1346 908 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 5 905 IPR031099 GO:0006281|GO:0006974
Lele35g1346 908 SUPERFAMILY BRCT domain 685 777 IPR036420 -
Lele35g1346 908 CDD BRCT_Bard1_rpt1 685 764 - -
Lele35g1346 908 SMART BRCT_7 678 761 IPR001357 -
Lele35g1346 908 SMART BRCT_7 794 901 IPR001357 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 401 445 - -
Lele35g1346 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 639 IPR013083 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 300 496 - -
Lele35g1346 908 Gene3D BRCT domain 682 787 IPR036420 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 174 193 - -
Lele35g1346 908 SUPERFAMILY RING/U-box 6 73 - -
Lele35g1346 908 Pfam BRCA1 C Terminus (BRCT) domain 710 757 IPR001357 -
Lele35g1346 908 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 80 94 - -
Lele35g1346 908 SMART PHD_3 589 637 IPR001965 -
Lele35g1346 908 CDD ePHD 520 636 - -
Lele35g1346 908 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Lele35g1346 908 ProSiteProfiles Extended PHD (ePHD) domain profile. 517 637 IPR034732 -
Lele35g1346 908 ProSiteProfiles BRCT domain profile. 792 908 IPR001357 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 166 216 - -
Lele35g1346 908 ProSiteProfiles BRCT domain profile. 719 771 IPR001357 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 64 131 - -
Lele35g1346 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 99 IPR013083 -
Lele35g1346 908 Gene3D BRCT domain 793 901 IPR036420 -
Lele35g1346 908 MobiDBLite consensus disorder prediction 194 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1346 Lele-ChrLele35 19447824 19453967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1346 14 54 C3H Transcription Factor Family AT5G54990 50.000 7.53e-06 46.2