Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele35g1346 | ATGGGCGATCCGACTCATCTCGAGCAGATGGGCAGAGAACTCGACTGTCCCATATGTTGGAGTTTACTGGATTCTGCAGTTTCTCTTACGTGTAATCATGTATTCTGCAACTCTTGTATTGTGAAATCAATGAAATCAGGTTCAAGTTGCCCTGTGTGTAAAGTGCCCTTCCGGCGTAGAGAGATTCGCGCTGCTTCTCATATGGATAACTTGAAAAAAAAAGAGACCCACAAAAGGAAGGGATCAAGGAAAGAGACTGAGGCCAGCAAGAAGAATTCTGATGCTGACTCTGTAAAACCTACCTTTCCAACAAAGAAAAGGGTTCAGTTGCCACAAAGTCCTCTTTCAAAAACTCCATTTAAGAATGCAGGGCTTGGGCCTTCTCTAAGGGAAATTATCAAAGAGGGAAGAAAAGAGGGTTTGGCCACCTCAAGTGGGAGTCGTATCAGAAATGAGAAAGAAGTAGCTCTTTCACCCTTCTTTTGGTTAAGAGATGAAAAAGATGGAGAAAAGTCAAGTCAGAGTACCGTTGGGGATAACCTCAGCGATTCACCAACACCAAATCTTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAACCCTTCTAAAGCGACTCCATCAGATGATGTACAAGATAAAACTTTCGTTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCCCCTGAATTATGCTCAAGTCCCTTCAGGATGCAGGTTGAAGATCCCGGTGAGATTGATGAAAATCAAGTGAAGGGTTATGTACCTGACTCCCCGGACCTTGAAGCAAATCAATTAAGTGCTGAGAATATAAAATTTGAGAATTTGAAACAAGGAAATGATTTGAACACGATGACACCTGGAGTGGCTTCTCTTCAAAAGAATATGAGAAAGAGGAGCAGGAAGGCAACAGAAAAACCCCAGAAAGAGCAGACTGAAAAACATGGAGCCCCAGTTAATGGAACTGACTTCATTCCAGAGAGATTATCAACACCAACACCTCAAACTGCTCGGGCACCTTCTGATATATCTGAGATTATTAGTAACGGGGAAGCAAAGATGGTAAATGATTCACCAGCTTCACCATGTAAACAAGAACGTGAGAAGGATTATAATCTGAAAAATTCTAAGAAAAGCCAGAGGAAAAGGTATGGGAAAAAAAAGCAGGACAATTTACAAAAGATAGTCGAAGACTCATCTTCAATGCAAAACTGTAACAATGAGAATGCTGGTGGTCAATCGTCGACTTTAATTCTCCAGAAGGATAATAATGGAAACCCGTGCAGTAGCAGGCAAATAGAAATTAGTTCTGGCAGAAAATCCAAGTCCAGCAACAGAGAATTGAGGAATAATAAAAGGTTAAAAGTTTCATCTGATTGCATTTCCCAGCAGGCACATGGTGAAGAAACTCAGCCTACCAAGAGGATTCTTCAACACCCTGAAAGTGGGGCTTTAAGTGAATCATTACAAGAGAAACACCGTCCTCTGACTGGTGAAGTAGTTTTACGGAAATGTGAGACCCATATCAAGAAGTTCCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCAGATGGTGCATTACTATAAGGGCAAGCCTGTTGCTGCAGATCATGAAGGAGGATCAAAAGTCATACATTCTCACAAGAATTGCACTGAATGGGCCCCCAATGTATATTTTGAAGATGATATTGCAATTAATCTTGAAGCTGAAATAAGCAGAAGTCGAAGAATTAAATGTAGTTTCTGTGGACTTAAGGGGGCGGCACTAGGTTGTTTTGAAAAAAGTTGTCGCAGGAGCTTTCATGTTACTTGTGCCAAGTGTACTTCTCAGTGTCGATGGGATATGGATAACTTTGTCATCCTCTGTCCTCTTCACGCTTCTTTGAAGTTGCCTTGTGAACGTACAGGAACTCAAAACAGAAGCAACAAGTGCACAGCTAAGTAAAATCAGCGCAATAACACTGCTGGCAAGCATGACCCTGGCGTCCAAAATCTGAATGCTCGTTGGTCATATAAAAAAATTGTTGTCTGTTGTTCAGCTTTATCCGAACCAGAGAAGGATGTCGTTTCTGAATTTGAAAGAGTTACAAAGGTTACGGTTTTGAAAAAGTGGGATGCAAGTGTGACCCACGTGATAACATCGACAGATGAAAATGGGGCATGCAAAAGAACCCTCAAAGTGCTGCAGGGTATCCTCGAGGGAAAGTGGATTCTCAATGCGGAATGGATTAAAGCATCCATGCGAGCAATGGAACCTGTTGATGAGGAGCGTTATGAAATTACTGTTGACATCCATGGAATCCAGGATGGCACTCGTCTTGGAAGACTAAGAGTATTGAATAAGCAACCAAAGCTTTTTGATGGCAACAAGTTCTATTTTATGGTGGATTTTACGCCGTCATATAAGGGTTATTTACAGGACCTTGTCACGGCTGCTGGAGGGATCTTTCTGCACAGAAAACCATTATGTCGTGACCAAAAAGCATTATCACCTGATAGCCATCCATCCCAAACCTTCATAATTTACAGCCTCGAACTTCCTGATGAATTTGATCCCTTAAAAAGGGAAACAATTCTCAGTCAAAGGCAAAATGATACAGAGGCTTTGGCAAGTTCAGCTGGTTCAAAAGCAGCGAGTAATACATGGATTTTAGATTCTATATCAGCTTGCAGGATGCAAAACCTTGTTCAATAA | 2727 | 0.4155 | MGDPTHLEQMGRELDCPICWSLLDSAVSLTCNHVFCNSCIVKSMKSGSSCPVCKVPFRRREIRAASHMDNLKKKETHKRKGSRKETEASKKNSDADSVKPTFPTKKRVQLPQSPLSKTPFKNAGLGPSLREIIKEGRKEGLATSSGSRIRNEKEVALSPFFWLRDEKDGEKSSQSTVGDNLSDSPTPNLPSFSDLKDSDDENPSKATPSDDVQDKTFVDLFDSEMFEWTQRPCSPELCSSPFRMQVEDPGEIDENQVKGYVPDSPDLEANQLSAENIKFENLKQGNDLNTMTPGVASLQKNMRKRSRKATEKPQKEQTEKHGAPVNGTDFIPERLSTPTPQTARAPSDISEIISNGEAKMVNDSPASPCKQEREKDYNLKNSKKSQRKRYGKKKQDNLQKIVEDSSSMQNCNNENAGGQSSTLILQKDNNGNPCSSRQIEISSGRKSKSSNRELRNNKRLKVSSDCISQQAHGEETQPTKRILQHPESGALSESLQEKHRPLTGEVVLRKCETHIKKFQCAFCLSSEESEASGQMVHYYKGKPVAADHEGGSKVIHSHKNCTEWAPNVYFEDDIAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVTCAKCTSQCRWDMDNFVILCPLHASLKLPCERTGTQNRSNKCTAKXNQRNNTAGKHDPGVQNLNARWSYKKIVVCCSALSEPEKDVVSEFERVTKVTVLKKWDASVTHVITSTDENGACKRTLKVLQGILEGKWILNAEWIKASMRAMEPVDEERYEITVDIHGIQDGTRLGRLRVLNKQPKLFDGNKFYFMVDFTPSYKGYLQDLVTAAGGIFLHRKPLCRDQKALSPDSHPSQTFIIYSLELPDEFDPLKRETILSQRQNDTEALASSAGSKAASNTWILDSISACRMQNLVQ | 908 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 368 | 383 | - | - | |
Lele35g1346 | 908 | Pfam | PHD-like zinc-binding domain | 558 | 636 | - | - | |
Lele35g1346 | 908 | FunFam | Breast cancer associated RING 1 | 514 | 639 | - | - | |
Lele35g1346 | 908 | SUPERFAMILY | BRCT domain | 796 | 905 | IPR036420 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 446 | 460 | - | - | |
Lele35g1346 | 908 | FunFam | Breast cancer type 1 susceptibility protein homolog | 682 | 788 | - | - | |
Lele35g1346 | 908 | Pfam | Zinc finger, C3HC4 type (RING finger) | 16 | 53 | - | - | |
Lele35g1346 | 908 | SMART | ring_2 | 16 | 53 | IPR001841 | - | |
Lele35g1346 | 908 | SMART | ring_2 | 590 | 636 | IPR001841 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 461 | 477 | - | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 332 | 349 | - | - | |
Lele35g1346 | 908 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 5 | 905 | IPR031099 | GO:0006281|GO:0006974 | |
Lele35g1346 | 908 | SUPERFAMILY | BRCT domain | 685 | 777 | IPR036420 | - | |
Lele35g1346 | 908 | CDD | BRCT_Bard1_rpt1 | 685 | 764 | - | - | |
Lele35g1346 | 908 | SMART | BRCT_7 | 678 | 761 | IPR001357 | - | |
Lele35g1346 | 908 | SMART | BRCT_7 | 794 | 901 | IPR001357 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 401 | 445 | - | - | |
Lele35g1346 | 908 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 514 | 639 | IPR013083 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 300 | 496 | - | - | |
Lele35g1346 | 908 | Gene3D | BRCT domain | 682 | 787 | IPR036420 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
Lele35g1346 | 908 | SUPERFAMILY | RING/U-box | 6 | 73 | - | - | |
Lele35g1346 | 908 | Pfam | BRCA1 C Terminus (BRCT) domain | 710 | 757 | IPR001357 | - | |
Lele35g1346 | 908 | ProSitePatterns | Zinc finger RING-type signature. | 31 | 40 | IPR017907 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 80 | 94 | - | - | |
Lele35g1346 | 908 | SMART | PHD_3 | 589 | 637 | IPR001965 | - | |
Lele35g1346 | 908 | CDD | ePHD | 520 | 636 | - | - | |
Lele35g1346 | 908 | ProSiteProfiles | Zinc finger RING-type profile. | 16 | 54 | IPR001841 | - | |
Lele35g1346 | 908 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 517 | 637 | IPR034732 | - | |
Lele35g1346 | 908 | ProSiteProfiles | BRCT domain profile. | 792 | 908 | IPR001357 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 166 | 216 | - | - | |
Lele35g1346 | 908 | ProSiteProfiles | BRCT domain profile. | 719 | 771 | IPR001357 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 64 | 131 | - | - | |
Lele35g1346 | 908 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 99 | IPR013083 | - | |
Lele35g1346 | 908 | Gene3D | BRCT domain | 793 | 901 | IPR036420 | - | |
Lele35g1346 | 908 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele35g1346 | Lele-ChrLele35 | 19447824 | 19453967 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele35g1346 | 14 | 54 | C3H Transcription Factor Family | AT5G54990 | 50.000 | 7.53e-06 | 46.2 |