Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1343 ATGGGTCGTCGAAAGATCGAGATGAAGCTGGTGAGAGACTCAGGCTCGAGGCAAGTCACCTTCTCCAAGCGTCGAAACGGGGTCTTCAAGAAAGCGAACGAGCTCGCGACCTTGTGTGGAGCAGAAGTCGCCGTCGTCACTTTCTCTCCCGGCGGAAAACCTTTCTCCTACGGCGTACCGAGCGTCGACACCGTCACTGACAGGTTCCTCCGCGGTGGTTCCGCCAGGAGCAAACCCAACAGCAACAACAATGACGGATCAAAGAAGGGTCGGGCAAGTAAGAATGGCGGTGCTGTGACTGAGAAGCTGAACCAGAAGCTGATGAATCTGATGAACGAGAGTGAGGCGGAGAAGAAGAAGGGAGAGATACTTGACGAGAGGTTGAAGGAGATGAAGTTGAATCATCAGGGTGAGCTGCCATTGGGGGGTCTGAATCTGAACAAGGATGAGCTTCAAAAGCTGAAGAAATCTCTGGAAGAAATGAAAGAAGAAGTTCAAGAGGGTGTGAAGCAATTGGAGGCATCTTCAAGCTCGATGCTTCTTGCTAAGAAAGCTGTGAACAAGAAAGAGAAAGAGATCAGTAGTAGTAGTGCTTCTGCAAAACATGCTTGA 612 0.5033 MGRRKIEMKLVRDSGSRQVTFSKRRNGVFKKANELATLCGAEVAVVTFSPGGKPFSYGVPSVDTVTDRFLRGGSARSKPNSNNNDGSKKGRASKNGGAVTEKLNQKLMNLMNESEAEKKKGEILDERLKEMKLNHQGELPLGGLNLNKDELQKLKKSLEEMKEEVQEGVKQLEASSSSMLLAKKAVNKKEKEISSSSASAKHA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1343 203 MobiDBLite consensus disorder prediction 71 99 - -
Lele35g1343 203 Coils Coil 100 120 - -
Lele35g1343 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lele35g1343 203 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Lele35g1343 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 MobiDBLite consensus disorder prediction 75 90 - -
Lele35g1343 203 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Lele35g1343 203 Coils Coil 141 175 - -
Lele35g1343 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Lele35g1343 203 PANTHER MADS BOX PROTEIN 3 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1343 Lele-ChrLele35 19432329 19432940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1343 1 184 Type I MADS-box Gene Family AT2G34440 45.109 7.42e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele35g1343 SRF-TF 2.2e-23 No_clan