Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1334 ATGAGACTCTCTTCAGCTGATTTTACTCCTTCACCCCAAGAAGGAGAAAAGCGAGTTCTAGATTCTGAGCTTTGGCATGCTTGTGCTGGCCCTCTTGTTTGCCTGCCAGCTGTTGGAAGCCGCGTCGTCTACTTCCCCCAGGGTCACAGTGAACAGGTTGCTGCATCAACTAACAAGGAGGTGGATGTCCATATTCCCAACTACCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTCACTATGCATGCTGATGCAGAGACAGATGAAGTATACGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAACAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTTCCAGTAAACAGCCAACGAACTACTTCTGCAAAACTTTGACTGCTAGTGACACTAGCACTCACGGGGGATTCTCTGTTCCTCGTCGGGCTGCTGAGAAAGTGTTTCCTCCACTGGATTTCTCTCAGCAGCCTCCTGTTCAAGAATTGATTGCACGGGACTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCTAAACGACATCTACTTACAACAGGATGGAGTGTCTTTGTAAGTGCTAAAAGGCTTGTTGCTGGTGATTCTGTGCTGTTTATGTGGAATGACAAGAATCAATTGCTTCTTGGTATTCGACGTGCAAATCGACCACAAACAGTGATGCCATCATCAGTGCTCTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCGCATGCAGCTGCAACAAACAGCCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTGTATAATACCCGAGTTTCAGTGGGCATGCGCTTCCGGATGTTGTTTGAAACAGAGGAATCAAGCGTCCGGCGATACATGGGCACAATCACTGGCATTAGTGACCTGGATCCTGTGAGGTGGCCAAATTCGCATTGGCGATCAGTTAAGGTTGGCTGGGATGAGTCCACGGCAGGAGATAGGCAACCCAGAGTGTCCTTGTGGGAAATTGAGCCATTAACGACATTTCCAATGTATCCTTCCCCATTCCCTCTGAGGCTTAAACGACCGTGGCCTACTGGACTGCCTTCTTTCCACGGTATGAAGGATGATGATTTGGGTATGAATTCTCCACTGTTCTTGGATAGAGGACTTCAGTCTCTTAATTTTCCTGGAATCGGGGTTACTCCTTGGATGCAACCAAGGTACGATCCGTCTTTTCTGAATCTGCAAACCGATATGTACCAAGCCATGGCCACTGCCGCCCTTCAGGATATAAGGACTATAGATCCTTTGAAACAGCATGTGTCATCGCTGCTTCAATTTCAGCAACCACACAACTTCCCCAACAGGACTGCTGATTTAGTGCAGGCCCAGATGATGCAGCCGTCTCAACCTCAGCAAGTTTTTCAAAATAATCAAGAGAATATGCATCCATCTCAATCTGAGGCTCTAAGTCAGACTCATCTTCAGCATCAAAACTCTTTCGTTAATCAGCACCAGCACCAGCACCAGCACCAGCAGCCACAACAGCATCATAAACAGCAAAGTTTTTCTGATCAGCAGATTTCAAATACTGTCTCTACAATGTCTCAGTTTGTTTCTGCACCTCAACAACCTCAGTCACCACCGACACAAGCTATTTCTTCGTTGTGCCATCAACCAAGTTTTTTTGATTCAAATGGGAACAGTGTAACTACTACTGGAATGGTTTCTCCACTGCATGGTATTTTGGGTTCATTTCCCCAAGAAGAACCTTCTCACCTTCTCAATATTCCTAGGACAAGCTCTTGGATACCTGTTCAACCATCTACTCCTACTGCTACTTGGCCTTCCAAGCGTGTTGCTGTGGACCCTCTTCTTTCTTCTGGAGCTTCTCAATGTGATCTGCCTCACATGGATCAGTTAGGGCAGCGTCAGAATACATTGTCTCAAAATGCAGTTACTTTGCCACCCTTTCCCGGAAGGGAGTGCTCAATTGACCAAGAAGGGAGCACTGATCCACAAAACCATCTTTTATTTGGCGTTAATATAGAGCCCTCGTCTCTTTTAGTGCAGAACGGGATGTCAGGCCTTAAGGTGGTTAGCAGCAACGTTGATTCCACAACCATACCTTTTCAGTCTTCTAATTACCTGAATGCTAGAGGCACTGAATCTACGTTGAATTCTGCAATGTCACAAACCATTGGTGAATTAGGATTCCTGCAGGCCCCAGAAAATATGGGCCAAGGAAATTCTCCTAATAAAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCGTTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGGCGTGAGCTCGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTCGTCAACAGCGTATGGTGTATCAAGATACTTTCCCCACAAGAAGTGCAACAAATGGGCCATAATGGCCTGGAGCTCCTGAATTCGGTTCCGATTCAAAGACTTTTGAACGGCACATGTGAAGACTTTGTGAGCCGACAGGACCCAAGAAGTTTAAGCTCTGGGATCACAACTGTGGGGTCTCTAGACTACTAA 2706 0.4667 MRLSSADFTPSPQEGEKRVLDSELWHACAGPLVCLPAVGSRVVYFPQGHSEQVAASTNKEVDVHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTSSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPVQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFMWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYNTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGMKDDDLGMNSPLFLDRGLQSLNFPGIGVTPWMQPRYDPSFLNLQTDMYQAMATAALQDIRTIDPLKQHVSSLLQFQQPHNFPNRTADLVQAQMMQPSQPQQVFQNNQENMHPSQSEALSQTHLQHQNSFVNQHQHQHQHQQPQQHHKQQSFSDQQISNTVSTMSQFVSAPQQPQSPPTQAISSLCHQPSFFDSNGNSVTTTGMVSPLHGILGSFPQEEPSHLLNIPRTSSWIPVQPSTPTATWPSKRVAVDPLLSSGASQCDLPHMDQLGQRQNTLSQNAVTLPPFPGRECSIDQEGSTDPQNHLLFGVNIEPSSLLVQNGMSGLKVVSSNVDSTTIPFQSSNYLNARGTESTLNSAMSQTIGELGFLQAPENMGQGNSPNKTFVKVYKSGSFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGHNGLELLNSVPIQRLLNGTCEDFVSRQDPRSLSSGITTVGSLDY 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1334 901 SMART B3_2 127 229 IPR003340 GO:0003677
Lele35g1334 901 FunFam Auxin response factor 291 363 - -
Lele35g1334 901 SUPERFAMILY CAD & PB1 domains 760 843 - -
Lele35g1334 901 FunFam Auxin response factor 125 229 - -
Lele35g1334 901 FunFam Auxin response factor 763 857 - -
Lele35g1334 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 857 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele35g1334 901 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lele35g1334 901 MobiDBLite consensus disorder prediction 480 573 - -
Lele35g1334 901 Gene3D - 291 363 - -
Lele35g1334 901 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele35g1334 901 ProSiteProfiles PB1 domain profile. 768 852 IPR000270 GO:0005515
Lele35g1334 901 Gene3D - 125 228 IPR015300 -
Lele35g1334 901 Gene3D - 764 857 - -
Lele35g1334 901 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lele35g1334 901 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lele35g1334 901 CDD B3_DNA 126 227 IPR003340 GO:0003677
Lele35g1334 901 Pfam AUX/IAA family 758 853 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1334 Lele-ChrLele35 19365721 19370627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1334 1 479 B3 DNA Binding Superfamily AT1G30330 86.157 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele35g1334 AUX_IAA 3.6e-07 CL0072