Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1324 ATGGACGAGCAGAAGCGCTGCTTGCCGGTTCTGCCATGGATGCGGGACCCTGTTGATGTCACTTTATCTGAAGAATGCCCTCTCGAATGCGTTCCTTGTCTTCACCCCAAATACAGGCATAGCTCGCAGACTCTGATTTGTGAAGTAACTAACTATTGGGTGGGCAAGTATCAATCTGATCTTCCAGTTTGTAGGAAGGTTGAAGTTTCTTTTTGGCCTGACATCAGGTTGAAGTTGGCATTGCAGAATATAGGCATCTCTAGGCTCTTTCCTGTGCAAGTTGCAGTTTGGGAAGAGACCGTTGGGCCTGGAAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATTGTGCAAATGCTGTCAAACCGTGTTGTAAAATTCTTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCCTTACAGGTCAAAGAAGTTTTTGACGCCATTGCGTCTCCATTAGGTTTACATGTTGTCTTGGCTGTTGGTCAATCTTCAATAGATGATGAGATTTCTAAGCTTGTGGATATACCAGGATATGAGTTAGGCATGTGTTATGATCCGGAAGATATATCTCTCAATTACCAACTTGGCTTCCGAAGTAAGGTGGATATATTGGTAGCTACTCCTGGAAGGCTCATGGATCACATCACCACTACGAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTCCGGGAGGCCTACCAATCCTGGTTACCTACTGTGTTGGAACTAACTCGATCTCAGGACAAGAATATTTATCCACCAGCTGGTTCATTTCTTCTTAATTCATTTAGTTCATTAAGCACTATAAGGAGATGGCTTCCAGAAAATTTGGAATCACTTAAAGTGATCTGCGAAACGAAGGTCAAACCCTTGTATTTAGCCGCCCTTTTAAAAACATTGGGAGGAGAAAAATGCATAGTTTTTACGAAATCTGTGGATTCAACACATCGTCTGTGCAAATTACTGAACTATTTCAGTGATCTTCAAATTAAGATCAAGCATTATTCTAGTCTTCAACCTCAACGTATAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCTTCTGATGCGATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTGTTAACTATGACATGCCGGAATACATAAAGACTTATGTTCATCGAGCTGGTAGGACAGCAAGAGCTGGGCAGACTGGGCGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGCTGCAGAAAGCTGATAACAGTTCTTGCCTTGATCACACTCTGCCCTCCACTTTGATCGAAGAACTTCACGCTACTTACCAATCAGCGCTGAAAAGATTTAAAGGGACAATTTCAGAAGCCCGAAAGGAGAAACCCAAGAGCAGTTCAGAGACTTCTCAAGCTAACAAAGTGAACGAAAAAGAGTATACAGGGGAATAG 1527 0.4276 MDEQKRCLPVLPWMRDPVDVTLSEECPLECVPCLHPKYRHSSQTLICEVTNYWVGKYQSDLPVCRKVEVSFWPDIRLKLALQNIGISRLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKFLRALVVVPTRDLALQVKEVFDAIASPLGLHVVLAVGQSSIDDEISKLVDIPGYELGMCYDPEDISLNYQLGFRSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSQDKNIYPPAGSFLLNSFSSLSTIRRWLPENLESLKVICETKVKPLYLAALLKTLGGEKCIVFTKSVDSTHRLCKLLNYFSDLQIKIKHYSSLQPQRIRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVVNYDMPEYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLQKADNSSCLDHTLPSTLIEELHATYQSALKRFKGTISEARKEKPKSSSETSQANKVNEKEYTGE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1324 508 MobiDBLite consensus disorder prediction 493 508 - -
Lele35g1324 508 Pfam Helicase conserved C-terminal domain 312 423 IPR001650 -
Lele35g1324 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 288 IPR014001 -
Lele35g1324 508 SMART helicmild6 339 423 IPR001650 -
Lele35g1324 508 Gene3D - 66 302 IPR027417 -
Lele35g1324 508 Pfam DEAD/DEAH box helicase 91 268 IPR011545 GO:0003676|GO:0005524
Lele35g1324 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 445 IPR027417 -
Lele35g1324 508 MobiDBLite consensus disorder prediction 480 508 - -
Lele35g1324 508 CDD DEADc_DDX51 77 293 - -
Lele35g1324 508 Gene3D - 303 507 IPR027417 -
Lele35g1324 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 465 IPR001650 -
Lele35g1324 508 PANTHER RNA HELICASE 80 475 - -
Lele35g1324 508 CDD SF2_C_DEAD 305 431 - -
Lele35g1324 508 SMART ultradead3 85 306 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1324 Lele-ChrLele35 19292405 19297659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1324 109 438 Eukaryotic Initiation Factors Gene Family AT3G13920 24.217 1.69e-25 107